Rhizobium sp. Kim5: Kim5_CH00141
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Entry
Kim5_CH00141 CDS
T05501
Symbol
dnaX
Name
(GenBank) DNA polymerase III subunit gamma/tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
rhk
Rhizobium sp. Kim5
Pathway
rhk03030
DNA replication
rhk03430
Mismatch repair
rhk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Kim5_CH00141 (dnaX)
03430 Mismatch repair
Kim5_CH00141 (dnaX)
03440 Homologous recombination
Kim5_CH00141 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhk03032
]
Kim5_CH00141 (dnaX)
03400 DNA repair and recombination proteins [BR:
rhk03400
]
Kim5_CH00141 (dnaX)
Enzymes [BR:
rhk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Kim5_CH00141 (dnaX)
DNA replication proteins [BR:
rhk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Kim5_CH00141 (dnaX)
DNA repair and recombination proteins [BR:
rhk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Kim5_CH00141 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_gamma3
DUF3646
DNA_pol3_delta2
DNAX_ATPase_lid
AAA
AAA_22
AAA_16
AAA_30
AAA_5
AAA_14
AAA_19
RuvB_N
AAA_18
AAA_24
TsaE
AAA_assoc_2
SRP54
SKI
DUF815
Rad17
RNA_helicase
AAA_2
CbiA
nSTAND3
ABC_tran
AAA_28
VapE-like_dom
Motif
Other DBs
NCBI-ProteinID:
ARQ56267
LinkDB
All DBs
Position
complement(149171..151051)
Genome browser
AA seq
626 aa
AA seq
DB search
MSDTERQSKDAASTGTGYRVLARKYRPKDFTDLMVGQEPMVRTLTNAFETGRIAQAYMLT
GVRGVGKTTTARILARALNYKTSEIDKPTIDLRVPGEHCQAIMEGRHVDVIEMDAASHTG
IDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIR
KVPITVLSRCQRFDLRRISASDLVGLFSTIAAKEGIEAEADALAMIARAAEGSARDGLSL
LDQAIAHGAGAVQAEAVRGMLGLADRARIVDLFQHIVKGDVAGALGEFQSQYEAGANPVV
VLTDLADFTHLVTRQKYVPDAANDPSLSEIERTKAAEFAKGVAVTTLSRIWQMLLKGIPE
TEGSSRTAGAAEMVLIRLAHAAHLPAPEDAARRLAEFSGDNAGPRPASPPSGNGGGSGTR
VPYQSSVTARAPEISPSPPQPSAPVAMLRAVPSSQPETMPVGRIETKPAEAPKPLVRVNS
ISDIVDLAAEKRDVKLKALVRNFVRPVRIEPGRLDVNLTEGAPGTLLNELAVKLKEWTGI
HWIVSTSREEGGPTMVEAEAKAQQQRVSDARQDPDVAAILAQFPGAKIIDVRVRAPTPEE
EAEEITPPAVAESEEGDILPGDDIEF
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaccgagcgacaatcaaaagatgccgcctcgacgggcaccggataccgggtg
ctggctcgcaaataccgccccaaggatttcacggacctgatggtcggccaggagccgatg
gtccgcaccctcaccaacgccttcgaaactggccgcatcgcgcaggcctacatgctgacc
ggcgtgcgcggcgtcggcaagacgacgacggcacgcatcctggcgcgggcgctgaactac
aagacatcagagatcgacaagccgacgatcgaccttcgtgtgcccggcgaacactgccag
gcgatcatggaaggccggcatgtcgacgtgatcgagatggacgccgcatcccataccggc
atcgacgatataagagagatcatcgagcaggtgcgttaccggccggtttcggcgcgctac
aaggtctatatcatcgacgaagtgcacatgctgtcgacgcaggccttcaacgggttgttg
aagacgctcgaagagccgccggaacatgtgaagttcatcttcgccaccaccgaaatccgc
aaggtgccgatcaccgtgctgtcgcgctgccagcgcttcgacctgcgccgcatcagcgcg
tcggacctcgtcggactgttttcgacgatcgcggccaaggaaggcatcgaggcggaagcg
gacgcgctggcgatgatcgcgcgcgccgccgagggctcggcccgcgacggcctgtcgctg
ctcgatcaggcgatcgcccatggcgccggcgccgtgcaggcggaagccgtgcgcggcatg
ctcggccttgccgaccgcgcccggatcgtcgatctcttccagcatatcgtcaagggcgat
gtcgccggcgccctcggcgaattccagagccagtacgaggccggcgccaatccggtcgtg
gtgctgaccgatcttgccgatttcacccatctggtgacgcggcagaaatatgtgccggat
gcggcaaacgatccttcgctcagcgagatcgagcgcacgaaagcggctgaattcgccaag
ggcgttgcggtgacgacgctgtcgcgcatctggcagatgctactgaagggtattcccgaa
acggaaggctcgtcacgcacggcaggggccgccgaaatggtgctgatccggctggcgcat
gcggcgcatctgccggctcccgaggatgcggcgcggcggcttgccgaattttccggcgac
aatgccggtccgcgccccgcctccccgccttccggcaatggcggcggcagcggaacccgg
gttccctatcaaagcagtgtcacggcccgcgctcctgaaatctcaccgagcccgccgcag
ccgtccgcaccggtggcgatgctacgcgccgtgccgagcagccagccggagacgatgcct
gtcgggagaattgagacgaaaccggctgaggcaccgaagccgctcgtccgggtcaattcg
atcagcgatattgtcgaccttgccgccgaaaagcgtgacgtcaagctgaaggcgctggta
cgcaacttcgtgcggcccgtgcgcatcgagcctggccggttggacgtgaatctcaccgag
ggcgcgcctggcacgctgctgaacgagcttgccgtcaaactcaaggaatggacaggcatc
cactggatcgtcagcaccagccgcgaagaaggcgggccgacgatggtggaggcggaggcc
aaggcgcagcaacaacgggtcagcgatgcgcgccaggaccccgatgtcgcggccattctt
gcgcagtttccgggcgccaagatcatcgacgtgcgcgtcagggcgccgacgccggaggag
gaggcggaagagatcacaccgcccgctgtcgccgaatccgaagaaggtgatatcctgccc
ggcgacgacatagaattctaa
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