Rhizobium sp. Kim5: Kim5_CH01622
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Entry
Kim5_CH01622 CDS
T05501
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rhk
Rhizobium sp. Kim5
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rhk03016
]
Kim5_CH01622 (rnd)
Enzymes [BR:
rhk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Kim5_CH01622 (rnd)
Transfer RNA biogenesis [BR:
rhk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Kim5_CH01622 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
ARQ57715
LinkDB
All DBs
Position
complement(1635573..1636718)
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AA seq
381 aa
AA seq
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MIETTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDL
APFFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVCGFGDSVSYDQLVS
RSKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLSSQLDREGRTSWLREEM
DVLEARETYDMHPDDAWQRLKMRLRKPQELAILKYVAAWREREARARNVPRSRVLKDDAI
YEIAQQQPKDTEALGRLRTIPKGWERSTSGAAVIEAVNAALALPKAEMPHAPRQAQAPEG
AAAAVELLKVLLKLISEKHGVAPKVIANSEDLDKIAADGEKADVAALHGWRRDLFGEPAL
QLIQGQIGLRFAGRKVETVAL
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaaaccaccgccgatttggcggccgcctgcaaagagctggccaagtccgacttc
attaccatcgacaccgaattcctgcgtgagacgaccttctggccggagctctgcctgatc
cagatggcaagcccgacattagaggttctcgtcgatccgctggccaagggcatcgacctc
gcccccttcttcgagttgatggccgacaccaaggtgctgaaagtctttcatgccgcacgc
caggacatcgaaatcatcttcaatcgcggcaatctcattccgcatccgatcttcgacacg
caggtcgccgcgatggtctgcggtttcggcgacagcgtctcctatgatcagctggtcagt
cgcagcaagaacgtccatatcgacaagtcgtcgcgcttcaccgactggagccgccggccg
ctttccgacaagcagctggaatatgcgctggccgacgtcacgcatctgcgcgacgtctat
ctgtcgctgagttcacagctcgaccgcgaaggccgcacgtcgtggcttcgcgaggaaatg
gacgttctcgaggcccgcgaaacctacgacatgcatcctgatgacgcctggcagcggctg
aagatgcgattgcgcaagccgcaggagctggcgatcctgaaatatgtcgccgcctggcgc
gagcgcgaggcacgggcgcgcaacgtgccgcgttcgcgcgtcttgaaggacgatgcgatc
tacgagatcgcccagcagcagcccaaggatacagaagcgctcggccggttgcgcaccatt
ccgaagggctgggagcgctcgacctccggcgccgccgtcatcgaggccgtcaacgcggcg
ctcgcgcttccgaaggcggagatgccacatgcgccgcggcaggcgcaggcccctgaaggg
gccgctgccgccgtcgaactcctgaaggtgctgttgaagctgatctcggaaaaacacggc
gtagcgccgaaggtgatcgccaacagcgaggatctcgacaagatcgccgccgatggcgag
aaggccgacgtcgcggccctgcacggctggcggcgcgatcttttcggcgagccggcgctg
cagctgatccagggccagatcggactgcgattcgccggccggaaggttgaaaccgtcgcg
ctctga
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