Rhizobium sp. Kim5: Kim5_CH01771
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Entry
Kim5_CH01771 CDS
T05501
Name
(GenBank) ribonuclease E/G protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhk
Rhizobium sp. Kim5
Pathway
rhk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Kim5_CH01771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhk03019
]
Kim5_CH01771
03009 Ribosome biogenesis [BR:
rhk03009
]
Kim5_CH01771
Enzymes [BR:
rhk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Kim5_CH01771
Messenger RNA biogenesis [BR:
rhk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Kim5_CH01771
Ribosome biogenesis [BR:
rhk03009
]
Prokaryotic type
rRNA processing factors
Kim5_CH01771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
FXMRP1_C_core
Motif
Other DBs
NCBI-ProteinID:
ARQ57855
LinkDB
All DBs
Position
complement(1790631..1793501)
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AA seq
956 aa
AA seq
DB search
MLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVDYGGN
RHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDEDVEHVETAPMVDLSTQDQPDVGI
VPAEAPVAVADEIAPAAPAEAEASPEAAEEAPAKKARPRRSRKKVTEAAAETTATEDAVP
TDVEAEGASSVDNEDDGSTGGAMAAMVETDSISEDVDTSKRRHDDDDDDDDHGEEEVIES
VGAEDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRY
SVLMPNTARGGGISRKITNPADRKRLKEIARMLEVPQGMGVILRTAGANRTKVEVKRDFE
YLMRLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEEGYREAKDFMK
MLMPSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLRSGGYLIMNQTEALVSIDVNS
GRSTREHSIEDTALQTNLEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKEC
LKNDRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCAGTGHVRSQSSVALHVLRG
IEEYLLKNTTHNITVRTTPDIALYLLNHKRQTIVDYESRFGVAIVIDADGSVGAQHFAID
RGEAVENPVKIETLFNFAAIPEDDDDDIIIEADEDEDEELEEKPAAAERAATARSEGDGD
GNRKRKRRRRRRGRNGNAEQPVSAAGEAGDEDEDGDDEGAEGDETTGAAPEDRAENDDSQ
RRKRRRRGKRGGRRNRAEDGSELTAGEAGEGNGSDEDESDDVSNDVAPAEAAIVETVPEQ
PGEDQAAAAAVEGAAVVSEEVKPARGRGRRKPAASPVEALVVEAEAAPASEAEPELAEAS
ADLQTPAQEEAKPVRANRESNIASSEPTVKSTRSENGESDDGKPKKAGWWQRRGFF
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgcttatcgatgcgtctcacgaggaagagacgcgcgtcgttgtcgttcgcggaaaccgc
atagaagaatttgacttcgagtcgcagcacaagaagcagatccgcggcaatatctatctc
gcaaaggtaacgagggtcgaaccctcgctgcaggccgccttcgtcgattacggcggcaac
cggcacggcttcctggccttcgccgaaatccaccccgattattaccagataccgctcgcc
gaccgtcaggcgctgcttcgggccgaggccgaagagcatcgccgggacgaagacgtcgag
catgtcgaaaccgcgccgatggtcgacctttcgacccaggaccagccggatgtcggcatc
gtgcctgcggaagcaccggttgccgtagccgacgagattgcgccggccgcacctgccgag
gccgaggcatcgcccgaagccgccgaggaagcgccggccaagaaggcaaggccgcgccgc
agccgcaagaaggtcaccgaagcagctgctgaaacgaccgcgaccgaggacgccgttccc
acagacgtcgaggccgaaggcgcttcgagcgttgacaatgaggatgacggctcgaccggc
ggagcaatggccgcgatggtggaaaccgactcgatctccgaagacgtcgataccagcaag
cgtcgtcacgatgacgacgatgacgatgacgatcacggcgaagaggaagtcatcgaatcc
gtcggcgccgaagacgcgatggaagaagtgccagaccgcgtgcagcgcaagccgcgcaag
cagtatcgcatccaggaagtcatcaagcgccggcagatcctgctggtgcaggtcgccaag
gaagagcgcggcaacaagggcgcggcgctgaccacttatctctcgctcgccggccgctat
tccgtgctgatgccgaatacggcgcgtggcggcggcatttcccgcaagatcaccaaccct
gccgaccgcaagcgcctgaaggaaatcgcgcgcatgctcgaagtgccgcagggcatgggc
gtcattctgcgcaccgccggcgccaaccgtaccaaggtcgaggtcaagcgcgacttcgaa
tatctaatgcgcctgtgggagaacgtgcgcacgctgacgctcgcctccaccgctccctgc
ctggtgtatgaggaaggctcgctgatcaagcgttcgatccgcgatctctacaataaggat
atcggtgagatcatcgttgccggcgaagaaggctatcgtgaagcgaaagacttcatgaag
atgctgatgccgagccacgccaaggtggttcagccctatcgcgacatccacccgatcttc
tcgcgttcgggcatcgaagcccagctcgaccgcatgctgcagccgcaggtgacgttgcgc
tccggcggctatctgatcatgaaccagacggaagcgctggtttcgatcgacgtcaactcc
ggccgctcgacgcgcgaacactcgatcgaggacacggcgctgcagacgaacctcgaagcg
gcggaagaaatcgcccgtcagcttcgcctgcgcgacctcgccggcctgatcgtcatcgac
ttcatcgacatggaagaaaagcgcaacaatcgcgccgtcgagaagaagctgaaagaatgc
ctgaagaacgaccgtgcccgcatccaggtcggccggatctcgcatttcggcctgctcgaa
atgtcgcgccagcgtattcgcgcttcggttctcgaatcgaccacgcaggtctgctcgcat
tgcgccggcaccggtcacgtccgttcgcagtcctccgtcgcgctgcatgtcctgcgcggc
atcgaagagtatctgctcaagaatacgacgcacaacatcaccgtgcggaccacccccgac
atcgcgctctacctgctcaaccacaagcgccagacgatcgtcgattatgagagccgcttc
ggcgtggcgatcgtcatcgatgcggacggctcggttggcgcgcagcatttcgccatcgat
cgcggcgaggccgtagaaaatccggtcaagatcgaaacgctcttcaacttcgcagctatt
cccgaggatgacgacgacgatatcatcatcgaggcggatgaggacgaagacgaggaactc
gaggaaaagccggctgctgccgaacgcgccgccacggcacgctcggaaggcgatggtgac
ggcaatcgcaagcgcaagcgccgcaggcgccgccgcggccgcaacggcaatgccgaacag
cctgtatcggctgcgggcgaagccggcgatgaggacgaggacggcgacgacgaaggcgcc
gaaggcgatgaaaccaccggcgctgcgcccgaggaccgtgccgaaaacgacgactcacag
cgccgcaagcgccgtcgtcgcggtaagcgtggcggtcgccgcaaccgcgccgaggacggt
tccgaactgaccgccggtgaagccggcgaaggcaacggcagcgatgaggacgaaagcgac
gatgtttcgaacgacgtcgctcctgccgaagctgcaatcgtcgagacagttcccgaacag
cccggcgaagaccaggccgcagcggccgccgtcgagggtgcggccgtcgtcagcgaggaa
gtgaagcccgcccgtggtcgcggccgccgcaagcccgccgcatcgccggtcgaggcgctt
gtggtcgaagccgaagcagcacccgcctccgaagccgagccggagttggccgaggcctcc
gccgaccttcaaacgcctgcccaggaagaggcaaagccggttcgcgccaaccgcgaatcc
aacatcgcctcgtccgagccgacggtgaaatcaacccgcagcgaaaatggcgaaagcgac
gacggcaagccgaagaaagccggctggtggcagcgccgtggcttcttctga
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