Rhizobium sp. Kim5: Kim5_CH01802
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Entry
Kim5_CH01802 CDS
T05501
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rhk
Rhizobium sp. Kim5
Pathway
rhk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Kim5_CH01802 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhk03021
]
Kim5_CH01802 (rpoC)
03400 DNA repair and recombination proteins [BR:
rhk03400
]
Kim5_CH01802 (rpoC)
Enzymes [BR:
rhk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Kim5_CH01802 (rpoC)
Transcription machinery [BR:
rhk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Kim5_CH01802 (rpoC)
DNA repair and recombination proteins [BR:
rhk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Kim5_CH01802 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_RND
BSH_YknX
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ARQ57878
LinkDB
All DBs
Position
1815908..1820116
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPQVPAQNFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTALKEHQLLSEEEYMLAVDEYGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRSELADTTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSILNQNEPGEGMAFSDLGELHHALE
SKVVTLHTKIRGRFKSVDEDGKPYSKIYETTPGRLLIGELLPKNGKVPFDICNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIPDAKAKIVADTESL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDENTGRQKPMNSIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVTHVDCGTETGLTMTAIVDAGQVVASLGARILGRT
ALDDIDHPITGERIVDAGKMILEPDVIEIEKAGIQSIRIRSALTCEIQTGVCSVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRN
LLRNSEGSLVAMGRNMTVQILDERGVERSSQRVAYGSKLHVDEGDKVKRGQRLAEWDPYT
RPMMTEVAGTVQFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIVIKDASG
NVAKLSRGGDARFMLSVDAILSVEPGTKVSQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVIIEPAEDGVEPVEYLIPKGKPFHLQDGDYIE
KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSTYIVGDNVDRIELEDVNDHLIEQGKKPAHGDPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDGLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDELILEERRK
GTGAAVATPMLQDMAEKAPAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatccgcaggtgcctgcacagaatttcgattcc
attcggatttcgatcgcgtctccggagaagatcctctcctggtcctacggtgagatcaag
aagccggaaaccatcaactaccgcacgttcaagccggaacgcgacggtctgttctgcgcg
cgcatcttcgggccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcgccgt
gagcgcatgggccatatcgagctcgccgctcccgtcgcccatatctggttcctgaagtcg
ctgccgtcacgcatttcgacgctgctcgatatgacgctgaaggatgtcgagcgcgtcctc
tatttcgaaaattacatcgtcaccgagccgggtctgaccgctctgaaggagcaccagctt
ctctcggaagaagaatacatgctcgccgtcgatgaatacggcgaagaccagttcaccgcg
atgatcggcgccgaggcgatctacgagatgctggcctcgatgaacctcgagaagattgcc
ggcgacctgcgctccgagcttgccgacacgacgtcggatctcaagcagaagaagctgatg
aagcgcctgaagatcgtcgagaacttcatggagtcgggcaaccgtccggaatggatgatc
atgaaggtcgtcccggtcattccgccggatctgcgtccgctcgttccgctcgacggcggc
cgtttcgcgacgtcggatctgaacgatctctatcgccgcgtcatcaaccgtaacaaccgc
ctgaagcgcctgatcgagcttcgcgcgccgggcatcatcatccgcaacgaaaagcgcatg
ctgcaggaatcggttgacgcgctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtcaccggt
ccggaactgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctcttcaag
ccgttcatctatgcccgcctcgacgccaagggttactcctcgaccgtcaagcaggccaag
aagctggtcgagaaggaaaagcccgaggtctgggatatcctcgacgaggtcatccgcgag
catccggttctcctgaaccgcgcgccgacgctgcaccgcctgggcatccaggccttcgaa
cccaccctggtcgaaggcaaggcgatccagctgcacccgctcgtctgcacggccttcaac
gccgacttcgacggcgaccagatggccgttcacgtgccgctgtcgctcgaagcccagctc
gaagcccgcgtgctgatgatgtcgaccaacaacatcctgcatccggccaacggcgcgccg
atcatcgttccctcgcaggacatggttctcggcctctattatctgtcgatcctcaatcag
aacgagccgggcgaaggcatggccttctccgatctcggcgaactccatcacgccctcgag
agcaaggtcgtgacgctgcacaccaagatccgcggccgcttcaagtcggtcgacgaggat
ggcaagccctactcgaagatctatgagacgacgcctggccgcctgctcatcggcgaactg
ctgccgaagaacggcaaggtgcccttcgacatctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgccactgcggccagaaggacacggtcattttc
tgcgaccgcatcatgcagctcggctttagccatgcctgccgcgccggcatttcgttcggc
aaggacgacatggtcattccggatgccaaggccaagatcgttgccgacaccgaaagcctg
gtgaaggaatacgagcagcagtataatgacggtctgatcacccagggcgaaaagtacaac
aaggttgtcgacgcctggggcaaggccaccgaaaaggtcgccgaagagatgatggcccgc
atcaaggcggtcgaattcgacgagaacaccggccgtcagaagccgatgaactcgatctac
atgatgagccattccggtgcccgcggttctccgaaccagatgcgtcagctgggcggcatg
cgcggcctgatggccaagccgtcgggtgaaatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgtcaacgagtacttcaactcgacccacggcgcccgcaagggtctg
gcagacaccgccttgaagaccgcaaactccggttacctaacccgccgtctcgtcgacgtc
gcgcaggattgcatcgtcacgcatgtcgattgcggtaccgaaaccggccttaccatgacc
gccattgtcgatgccggtcaggtcgtcgcctcgctcggcgcccgcatcctcggccgtacg
gcgctcgacgatatcgatcatccgatcaccggcgagcgtatcgtcgatgccggcaagatg
atccttgagcctgatgtcatcgagatcgagaaggccggtatccagtcgatccggatccgc
tcggcgctgacctgcgaaatccagacgggcgtctgctcggtctgctacggccgcgacctg
gcccgtggtacgccggtcaacatgggcgaagccgtcggcgttatcgccgctcagtcgatc
ggtgagccgggcacccagctcaccatgcgtaccttccaccttggcggtacggcgaccgtg
gtcgaccagtcgttcctggaagcgtcgtacgaaggtacggtgcagatcaagaaccgcaac
ctgctgcgcaactcggaaggcagcctcgttgccatgggccgcaacatgaccgttcagatt
ctggacgagcgtggcgtggagcgctcctcgcagcgcgtcgcctacggttcgaaactgcac
gtcgacgaaggggacaaggtcaagcgcggccagcgtctggcggagtgggatccttacacc
cgtccgatgatgacggaagtggccggtacggttcagttcgaggatctcgtcgacggtctc
tccgttctcgaagcgaccgacgaatccaccggcatcaccaagcgtcaggtcatcgactgg
cgttcgaccccgcgcggttcggacctcaagccggcgatcgtcatcaaggacgccagcggc
aatgtcgccaagctgtcccgcggcggcgacgcccgcttcatgctctcggtcgacgccatc
ctgtcggtcgagccgggcacgaaggtctcccagggtgacgttctcgcccgttcgccgctc
gaaagcgccaagaccaaggacatcaccggcggtctgcctcgtgttgccgaactgttcgaa
gcgcgccgtccgaaggatcacgccatcatcgcagagattgatggtacgatccgcctcggc
cgcgactacaagaacaagcgtcgagtcatcatcgagccggcggaagacggtgtcgagccg
gtcgaatacctgatcccgaagggcaagcccttccaccttcaggacggcgactatatcgaa
aagggtgattacatcctcgacggtaacccggctccgcacgacatcctggcgatcaagggc
gttgaggctctggcttcctacctcgtcaacgaaatccaggaagtctaccgtctgcagggc
gtcgtcatcaacgacaagcatatcgaggtgatcgtccgtcagatgctgcagaaggtggaa
atcaccgacgcaggcgactcgacctacatcgtcggcgacaatgtcgaccggatcgagctc
gaggacgtcaacgaccacctgatcgagcagggcaagaagcccgcccatggcgatccggtt
ctgctcggcatcaccaaggcgtcgctgcagaccccgtccttcatctcggccgcttccttc
caggaaacgaccaaggtgctgacggaagcggcaatcgccggaaagacggacggcctgcag
ggtctcaaggaaaacgtcatcgtcggccgcctcatcccggccggtaccggcggcaccatg
acccagatccgccgtatcgccacctcgcgcgacgagctgatcctcgaagagcgtcgcaag
ggcaccggtgcagccgttgccactccgatgctgcaggacatggctgaaaaggccccggcg
gcggaataa
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