Rhizobium sp. Kim5: Kim5_CH01951
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Entry
Kim5_CH01951 CDS
T05501
Symbol
xthA
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
rhk
Rhizobium sp. Kim5
Pathway
rhk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Kim5_CH01951 (xthA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhk03400
]
Kim5_CH01951 (xthA)
Enzymes [BR:
rhk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
Kim5_CH01951 (xthA)
DNA repair and recombination proteins [BR:
rhk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
Kim5_CH01951 (xthA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
ARQ58019
LinkDB
All DBs
Position
complement(1953303..1954094)
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AA seq
263 aa
AA seq
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MKIATWNINGVKARIDNLTQWLKDSDPDIVCLQEIKTIDEGFPRLEIEALGYHVETHGQK
GFNGVAILSKTSPSEVNRGLPGDALDEQSRFLEAVFTLPNTRILRVCCIYLPNGNPVETE
KYPYKLAWMERLRSFAAERLAYEEMLVLAGDYNVIPEPHDCFDPKVWENDALFLPQTREA
FRRLENLGLTDAVRATTDATRLYSFWDYQAGAWPKNNGIRIDHLLLSPEAADRMTSAAIE
KHVRAWEKPSDHVPVIAYFDFAA
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcgcgacttggaacatcaacggcgtcaaggcgcgcatcgacaatctgacgcaa
tggctcaaggattccgatcctgatatagtctgcctgcaggagatcaagacgatcgacgaa
ggttttcccaggctggagatcgaggcgctcggctatcacgtcgagacgcacggccagaag
ggcttcaatggtgtggcgattctctccaagacttcgccttccgaagtcaaccgcggcctg
cccggcgatgcgctggatgaacagtcgcgtttcctcgaggcggtgttcacgctgccgaac
acgcgcatcctgcgcgtctgctgcatctatttgccgaacggcaatcccgtcgaaacggag
aaatatccctacaagctcgcctggatggaacgcctgcggagctttgccgcagagcgcctc
gcctatgaggagatgctggtgcttgccggcgattataacgtcatccctgagccgcacgac
tgcttcgaccccaaggtctgggaaaacgatgcgctgtttctgccgcagacgcgggaggca
ttccgcaggctcgaaaatctcgggctgacggatgcggtgcgcgcaacgacggacgcgacg
cggctctattccttctgggactatcaggcaggtgcgtggccgaagaacaacggcatccgc
atcgaccacctgctgctctcaccggaggctgccgaccggatgacgtcggcggcgatcgaa
aaacatgtgcgggcctgggaaaagccgtccgaccacgtgcctgtcatcgcctatttcgat
tttgcggcctga
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