Rhizobium sp. Kim5: Kim5_CH02505
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Entry
Kim5_CH02505 CDS
T05501
Name
(GenBank) L,D-transpeptidase domain-containing protein
KO
K21470
L,D-transpeptidase YcbB
Organism
rhk
Rhizobium sp. Kim5
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rhk01002
]
Kim5_CH02505
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rhk01011
]
Kim5_CH02505
Peptidases and inhibitors [BR:
rhk01002
]
Cysteine peptidases
Family C82
Kim5_CH02505
Peptidoglycan biosynthesis and degradation proteins [BR:
rhk01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
Kim5_CH02505
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Scaffold
YkuD
PG_binding_1
PG_binding_3
Motif
Other DBs
NCBI-ProteinID:
ARQ58550
LinkDB
All DBs
Position
complement(2515075..2516982)
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AA seq
635 aa
AA seq
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MTFFLKSAVSALAVSSGLAVMAAPAHAYTLMDMLRGDRQRSQSTIFMDQAPGRPVPRGAA
GGSLGGLDPEAPLPKVSGPRYYTYKTETLQFVDTGKFADPVVTGAVAEVSPSGEAGAEPA
VQRRFLAQAKVRANADVGKALEAYYGDSRNPLVWVEGNGINERAKSAMAALADAASVGLD
PADYAIQTPAIDPANPDPAARDRALTQFELELSAKVLAFVQDTVRGRIDPNKISGYHDFQ
RKVVNLAPVLKLARLSPDTGAYIASRSPDSPQFEALKAELAKLRAADGGNEGQIVVSLSG
LLRPGDSSPEIANIVKAVQKHGSETLRTDHAATFAAYAGGSDYSPEIVALVEDFQKERGL
KADGVIGQATVRAMTGGDTNASKIDKLEVAMEQARWLPEDLGSRYVMINQPAYMAYYHDD
GKEQLSMRVVVGGKNNQTYFFNDEIETVEFNPFWGVPQSIIINEMLPKLRSDPNYLDQLG
YEVEVNGHAVASSSVDWYGSTDNVSVRQPPSSDNALGELKILFPNSHAIYMHDTPSKSFF
KRDMRALSHGCVRLSNPRAMAAAVLGTTVDDVAKQIANGQNHAVKVPQKIPVYVSYFTAW
PNKDGVVEYFDDVYGRDAYVKKAFDATTKARGAQI
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgacgttctttttgaaaagcgcggtatccgcattggcagtttccagcggcttggcagtg
atggccgctcccgcgcatgcttatacgctgatggatatgctgcgtggcgacaggcagcgg
agccagagcaccatcttcatggatcaggcgccgggccgaccggtgccgcgtggtgccgcc
ggaggctcgctcggcgggcttgatccggaagcgccgctgccgaaggtcagcggtccgcgt
tattacacctataaaaccgaaacgctgcagttcgtcgacaccggcaagtttgccgatccc
gtcgtcaccggcgcggtcgccgaggtttcgccgagcggcgaggccggcgccgaaccggcc
gtgcagcgccgtttcctggcgcaggccaaggtgcgcgccaatgccgacgtcggcaaggcg
ctcgaggcctactacggtgacagccgaaacccgctcgtctgggtcgaaggcaatgggatc
aacgagcgcgccaaatcggcgatggcggcacttgccgatgcggcctccgtcggccttgat
cccgccgattacgccatccagacacctgctatcgatccggccaatcccgatcccgccgcc
cgcgaccgggcgctgacccagttcgaactcgaactctcggccaaggtgcttgccttcgtg
caggacacggttcgcggccgcatcgatccgaacaagatttccggctatcacgatttccag
cgcaaggtcgtcaatctggcgccggtcctgaagcttgcccgcttgagccccgataccggc
gcttatatcgccagccgctcgccggatagtccgcagttcgaggcgctgaaggcggagcta
gccaagcttcgcgccgccgatggcggcaatgaggggcagatcgtcgtctcgctcagcggc
ctgctgaggcccggcgacagctcgcccgagatcgccaacatcgtcaaggccgtccagaag
cacggttccgagacgctgaggaccgatcacgccgcgacctttgcagcttacgccggcggc
agcgactattcgcctgagatcgtcgcgctggtcgaggatttccagaaggagcgcgggctg
aaggccgacggcgttatcggtcaggcgacggtgcgcgccatgaccggcggcgacacaaat
gcctccaagatcgacaagctcgaagttgccatggaacaggcgcgctggctgccggaagat
ctcggttcgcgttacgtcatgatcaatcagccggcctacatggcctactatcacgatgac
ggcaaggaacagctgtcgatgcgtgtcgtcgtcggcggcaagaacaatcagacctatttc
ttcaacgacgagatcgagacggtggagttcaacccgttctggggcgtgccgcagtcgatc
attatcaacgagatgctgccgaagctgcgctcggatccaaactatctcgatcagctcggc
tacgaggtcgaagtgaacggccacgctgtcgcctcgtccagcgtcgactggtacggctcg
accgacaatgtttcggtccgccagccgccaagcagcgacaatgccctcggcgaactcaag
atcctgttcccgaacagccatgcgatctacatgcacgacacgccgtcgaagagcttcttc
aagcgcgacatgcgggctctcagccacggctgtgtgcgcctttccaatccgcgcgcaatg
gctgccgccgtgctcggcacgacggtcgacgacgttgccaagcagatcgccaacgggcag
aatcatgcggtgaaggtgccgcagaagatcccggtctacgtgtcctacttcaccgcctgg
ccgaacaaggacggcgtcgtggaatattttgacgacgtgtacggccgtgatgcctatgtc
aaaaaggccttcgacgcgacgacgaaggcgcgcggcgcgcaaatctga
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