Rhizobium sp. Kim5: Kim5_CH02609
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Entry
Kim5_CH02609 CDS
T05501
Symbol
cobD
Name
(GenBank) cobalamin biosynthesis protein CobD
KO
K02227
adenosylcobinamide-phosphate synthase [EC:
6.3.1.10
]
Organism
rhk
Rhizobium sp. Kim5
Pathway
rhk00860
Porphyrin metabolism
rhk01100
Metabolic pathways
rhk01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00860 Porphyrin metabolism
Kim5_CH02609 (cobD)
Enzymes [BR:
rhk01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.1 Acid-D-ammonia (or amine) ligases (amide synthases)
6.3.1.10 adenosylcobinamide-phosphate synthase
Kim5_CH02609 (cobD)
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Paralog
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Motif
Pfam:
CobD_Cbib
Motif
Other DBs
NCBI-ProteinID:
ARQ58654
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All DBs
Position
complement(2615377..2616357)
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AA seq
326 aa
AA seq
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MMIDENLLVLLLALLLDRIVGDPQWLWSRVPHPVVIFGAAISYADQQLNPSSLTGSQRRM
NGVAAILALLVLSIAAGFVFDRFFALFGLAGLVLEAGLVAIFLAQKSLADHVAAVATALR
GEGLAGGRNAVSRIVGRDPETLDEPAVCRAAIESLAENFSDGVVAPALWYAVLGLPGLLA
YKMLNTADSMIGHRSEKYIDFGWAAARLDDIANWPAARLSVLLIAAGAWIRRGMSPCREA
IRVAMRDGGLHRSPNSGRPEAAMAGALNVQLAGPRIYGGVIVTEPMINNAGRDVATAGDI
EDGVSVFYASCMVLTGLIFGLFLCFL
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgatgatcgacgaaaacctcctcgtgctgcttctggcgctgctgctcgaccggatcgtc
ggcgatccgcaatggctgtggtcgcgggtgccgcatcccgtcgtcatcttcggcgcggcg
atctcttacgccgatcagcagctcaatccctcaagcctcacgggctctcagcgccggatg
aacggcgttgcggcgatcctggcgctgcttgtgttgtcgatcgctgcaggcttcgtgttc
gaccggtttttcgcgctcttcggccttgccggcctcgtgctggaggccgggctggtggcg
atcttcttggcgcaaaagagcctggccgatcatgtcgcggccgtcgctacggccttgcgc
ggcgaggggcttgccggcggccggaacgccgtctcccgcatcgtcgggcgcgatccggag
acactcgacgagccggccgtctgccgcgcggcgatcgaaagccttgcagaaaatttctcc
gacggcgtcgtggcgccggccctttggtatgccgtcctcgggttgccgggcctgctcgct
tacaagatgctgaacacggcggattcgatgatcggccacaggtcggaaaaatacatcgat
ttcggctgggccgcggctcggctggacgatatcgccaactggccggccgcccggctctcc
gtcctattgatcgccgccggcgcctggatccggcgcggcatgagcccctgccgcgaggcg
atccgggtggcgatgcgcgacggtggcctgcaccgctcgccgaattccggccggccggag
gcggcaatggccggtgctctcaacgtccagctcgccggtccgcgcatctatggcggtgtc
atcgtgactgagccgatgatcaacaacgccggccgggacgttgccaccgccggcgatatc
gaggacggtgtgtcggtgttctatgccagctgcatggtgcttaccggtctgatcttcgga
ttgtttttatgtttcttgtag
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