Rhizobium sp. Kim5: Kim5_CH03062
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Entry
Kim5_CH03062 CDS
T05501
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoylalanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
rhk
Rhizobium sp. Kim5
Pathway
rhk00470
D-Amino acid metabolism
rhk00550
Peptidoglycan biosynthesis
rhk01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Kim5_CH03062 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Kim5_CH03062 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rhk01011
]
Kim5_CH03062 (murD)
Enzymes [BR:
rhk01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
Kim5_CH03062 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
rhk01011
]
Precursor biosynthesis
Amino acid ligase
Kim5_CH03062 (murD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
2-Hacid_dh_C
MurD-like_N
NAD_binding_2
KARI_N
TrkA_N
NAD_Gly3P_dh_N
F420_oxidored
CbiA
Motif
Other DBs
NCBI-ProteinID:
ARQ59098
LinkDB
All DBs
Position
complement(3075912..3077324)
Genome browser
AA seq
470 aa
AA seq
DB search
MIPVTTLKDRKVALFGLGGSGFATARALIAGGADVTAWDDNPDSVAKASAEGIGTEDLHM
IDWSQQALFVLSPGVPLTHPKPHWTVDLARAAGVDIVGDVELFVRERRAHAPDCPFIAIT
GTNGKSTTTALIAHILKSSGYDTQLGGNIGTAVLTLDPPKAGRYFVVECSSYQIDLAPTL
NPSAGILLNLTPDHLDRHGTMQHYADVKERLVAGSDVAVVGVDDSHSALIADRVERAGVK
VVRISRRNVVAEGIYAEGTKLIQAAGGAMLPFVDLDGIQTLRGSHNAQNAAAAVAACLAV
GVSADDIRAGLASFPGLKHRMQPVGRRGRVVFVNDSKATNADAAAPALSSYDRIYWIAGG
LPKSGGITTLAPYFPRIAKAYLIGEAAAEFAATLGEAVPYEISGTLERAVAHAAADADRD
EAAASAVMLSPACASFDQYKNFEVRGDAFVSHVAALDGTTMLIGPVAGEK
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgatcccggtcacgacgctgaaagacaggaaggtcgcgcttttcgggctcggcggctcc
ggtttcgccaccgcacgtgcgttgatcgccggcggagccgatgtgactgcctgggacgat
aatcccgacagcgtcgccaaggcttccgccgaaggcatcggtaccgaagacctgcacatg
atcgactggagccagcaggcgctgttcgtgctgtcgcccggcgtgccgcttacccatccg
aagccgcactggacggtcgatctcgcgcgggccgcgggcgtcgacatcgtcggcgatgtc
gagctcttcgtgcgcgagcgtcgcgcccatgcaccggactgcccgttcatcgccatcaca
ggaaccaacggcaagtcgacgacgacggcgctgattgcccacatcctgaaatcatcaggc
tacgacacgcagctcggcggcaatatcggcacagcggtgctgacgctcgacccgccgaag
gcggggcgttatttcgtcgtcgaatgctcgtcataccagatcgatctggcgccgacgctg
aacccctcggccggcattctgctcaacctgacgcccgaccacctcgaccgtcacggcacg
atgcagcattatgccgacgtcaaggaacggctggtcgccggcagcgatgtcgcggtggtc
ggcgtcgacgacagccattcggcgttgatcgctgaccgcgtcgagcgggcaggcgttaag
gtggtccgcatctcgcgccgcaacgtggtggccgagggcatctatgccgagggcacgaaa
ctcattcaggccgccggcggtgccatgttgcccttcgtcgatctcgacggtattcagacg
ctgcgcggcagccacaatgcgcaaaacgccgcggctgcggtcgccgcctgtcttgccgta
ggggtttccgccgacgacatccgcgccggccttgcctccttccccggcctcaagcaccgc
atgcagccggtcggcagacgcggccgtgtcgtcttcgtcaacgattccaaggccaccaat
gccgatgcagcggcgccagcgctttcgagctatgatcgcatctactggatcgccggcggc
ctgccgaaatctggcggcatcacgacgctcgctccctatttcccgcgcatcgccaaagcc
tatctgatcggcgaggcggcggcggaattcgccgccacactcggcgaggccgttccctac
gaaatttcgggaacgctggagcgcgcagtcgcgcatgccgcagccgacgcggatcgcgac
gaggcggctgcttcggccgtgatgttatccccggcttgcgcaagcttcgaccagtataag
aacttcgaagtcaggggcgatgccttcgtcagccacgtggcggcacttgacggaacgacg
atgctgatcggtcctgtagcaggagagaaatga
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