Rhizobium sp. Kim5: Kim5_CH03423
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Entry
Kim5_CH03423 CDS
T05501
Name
(GenBank) ATP-dependent RNA helicase protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rhk
Rhizobium sp. Kim5
Pathway
rhk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Kim5_CH03423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhk03019
]
Kim5_CH03423
Enzymes [BR:
rhk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Kim5_CH03423
Messenger RNA biogenesis [BR:
rhk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Kim5_CH03423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
HEM4
AAA_19
Flavi_DEAD
AAA_22
Snf7
Motif
Other DBs
NCBI-ProteinID:
ARQ59447
LinkDB
All DBs
Position
3431087..3432772
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AA seq
561 aa
AA seq
DB search
MKPDRMVRSGHSHCGAPKGYALTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLQG
RDLIGLAQTGTGKTAAFGLPLIEKLLADERRPDNRTTRTLILAPTRELVNQIADNLKKFI
RKSHLRVNVVVGGVSINKQQLQLEKGTDVLVATPGRLLDLVNRRAITLTTVRYLVLDEAD
QMLDLGFVHDLRKIAKLVPKKRQTMLFSATMPKAIADLAGEYLVDPIKVEVTPPGKAADK
VEQYVHFVAGKNDKTELLRKSLTENPDGRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGN
KSQGQRERALKAFRDGSIKTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTAR
AGRDGIAIAFCAPDEAKLLRDIERLMGIDIAVASGEPPANIGNSGPRRGNGNGNNRNRGG
GQGRGEGRGEGRGDANRSEHRGSRQERRPRPERTGRNEDFRGQRRGEAAPDLGPDNDLVS
TSDFRPSAKPQRPAHGAHANGEPSGHHRGNNRHAHGRPARKHGEDRGQHQAQGGEPRREG
AGGNRRGGSGSRNGGQRRERA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccggatcgcatggtgcgttccggccatagtcattgtggcgccccgaaaggttat
gccttgactaattttgaatcgcttggtgtctccaagccgatcgtcgccaccttgttccag
ctcggcatcgaaacgccgacgccgatccaggaacaggccatccccctcctcctccagggc
cgagacctgattggccttgcccagaccggcaccggcaagaccgccgccttcggcctgccg
ctcatcgaaaagctgcttgccgacgagcgccgccctgacaaccgcacgacgcggacgctg
atcctggcgccgacccgcgaactggtgaaccagatcgccgacaatctgaagaagttcatc
cgcaagtcgcacctgcgcgtcaacgtcgtcgtcggtggggtctcgatcaacaagcagcaa
ctgcagctggagaagggcaccgatgtcctggtcgccaccccgggccgcctgctcgatctc
gtcaatcgccgcgcaatcaccctgaccacggtgcgctatctagttctcgatgaagccgac
cagatgctcgatctcggcttcgtgcacgatctgcgcaagatcgccaagctggtcccgaag
aagcggcagacgatgctgttttcggccaccatgccgaaggcgatcgccgatctcgccggc
gaatatctcgtcgatcccatcaaggtcgaagtcacgcctccgggcaaggctgccgacaag
gtcgagcagtatgtgcatttcgtcgccggcaagaacgacaagaccgaactgctgcgcaag
tcgctgaccgaaaaccccgatggccgagccatcgtcttcctgcgcaccaagcacggcgcc
gagaagctgatgaagcatctcgacaatatcggctattccgtcgcctcgatccacggcaac
aagagccagggccagcgcgagcgggcgctgaaggccttccgcgacggcagcatcaagaca
ctgatcgccaccgacgttgccgcccgcggcatcgacatcccggccgtcagccacgtctac
aactacgacctgcccgaagttcccgacgcctatgttcaccgcatcggccgcacggcgcgc
gccggccgcgacggcatcgccattgccttctgcgcccccgacgaagccaagctgctgcgt
gatatcgagcgcctgatgggcatcgacatcgcagtcgcaagcggcgaaccgccggccaac
atcggcaacagcggcccccgccgcggcaacggcaatggcaacaaccgcaatcgcggtggc
ggccagggtcgtggtgagggtcgcggcgaaggccgtggcgacgccaaccgctcggaacat
cgcggcagccgccaggaacgccgcccgcgtcccgagcggaccggccgcaacgaggatttc
cgcggccagcgccgcggcgaagcggccccagacctcggccccgacaacgacctggtctcg
acctccgacttccgtccctcggcaaagccgcagcggcccgcgcatggcgcccatgccaat
ggcgagccgagcggtcatcaccgcggcaataaccgccacgcccacggccgcccggcccgc
aagcacggtgaagaccgcggccagcaccaagcccagggcggcgaaccgcgccgtgagggc
gctggcggcaaccgccgcggcggctctggctcccgcaatggcggccagcgccgcgaacgc
gcctga
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