Rhizobium sp. Kim5: Kim5_CH04061
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Entry
Kim5_CH04061 CDS
T05501
Symbol
dgoD
Name
(GenBank) D-galactonate dehydratase
KO
K01684
galactonate dehydratase [EC:
4.2.1.6
]
Organism
rhk
Rhizobium sp. Kim5
Pathway
rhk00052
Galactose metabolism
rhk01100
Metabolic pathways
rhk01120
Microbial metabolism in diverse environments
Module
rhk_M00552
D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00052 Galactose metabolism
Kim5_CH04061 (dgoD)
Enzymes [BR:
rhk01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.6 galactonate dehydratase
Kim5_CH04061 (dgoD)
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Motif
Pfam:
MR_MLE_C
MR_MLE_N
Peptidase_M19
Motif
Other DBs
NCBI-ProteinID:
ARQ60065
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Position
4105584..4106732
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AA seq
382 aa
AA seq
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MKITKLTTYIVPPRWLFLKVETDEGIVGWGEPVVEGRALTVEAAVHELEDYLIGKDPFLI
EDHWTVMYRGGFYRGGAAHMSAISGIDQALWDIKGKALGQPIHSLLGGQLRDRIKVYSWI
GGDRPADVANNAREVVVRGFKAIKLNGCEEMQIVDTNEKVENAVETIAAIREAIGPHIGI
GVDFHGRVHKPMAKVLAKQLEPYKLMFIEEPVLSENKEALRDIVNHTSTPIALGERLYSR
WDFKQVLSDGYVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPLGPIALAACLQVD
AVSYNAFIQEQSLGIHYNTGNDILDYISNKEVFHYADGFVSIPQGPGLGIDVDEAYVIER
AKEGHRWRNPVWRHADGSFAEW
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcaccaaactcactacctatattgttccgccgcgctggctgtttctgaaggtc
gagacggacgaaggtatcgtcggctggggtgagccggtcgtcgagggccgcgcgctgacc
gtcgaggccgccgtccacgaactcgaagactacctgattggcaaggatcccttcctgatc
gaggaccactggacggtgatgtatcgcggcggcttctatcgcggcggtgccgcccatatg
agcgcgatctccggcatcgatcaggcgctctgggatatcaaaggcaaggcccttggacag
ccgatccattcgctgctcggcggccagctgcgcgaccgcatcaaggtctactcctggatc
ggcggcgaccgtcccgccgatgtcgccaacaatgccagggaggtggtcgtccgcggcttc
aaggcgatcaagctcaacggctgcgaggagatgcagatcgtcgacaccaatgagaaggtg
gagaacgcggtcgagacgatcgccgccatccgcgaggcgatcggcccgcatatcggcatc
ggcgtcgatttccacggccgcgtccacaagccgatggccaaggttctcgccaagcagctc
gaaccttacaagctgatgttcatcgaagagccggtgctctccgaaaacaaggaagcgctg
cgcgatatcgtcaaccacacctcgacaccgatcgcgctcggcgaacggctttattcccgc
tgggacttcaagcaggtgctttccgacggttacgtcgacatcattcagccggatctttcg
catgccggcggcatcaccgaatgccgcaagatcgcagccatggctgaagcctatgacgtg
gcgctggcgccgcattgcccgctcggcccgatcgcgctcgccgcctgcctgcaggtcgac
gccgtcagctacaacgccttcatccaggagcagagcctcggcatccattacaacaccggc
aacgacatcctcgattacatctccaacaaggaggtgttccactatgccgatggtttcgtc
tcgatcccgcagggcccaggtctcggcatcgacgtcgacgaagcctatgtcatcgaacgc
gccaaagagggccatcgctggcgcaacccggtctggcgccacgccgacggcagctttgcc
gaatggtaa
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