Rhizobium sp. Kim5: Kim5_CH04147
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Entry
Kim5_CH04147 CDS
T05501
Symbol
lysA
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
rhk
Rhizobium sp. Kim5
Pathway
rhk00300
Lysine biosynthesis
rhk00470
D-Amino acid metabolism
rhk01100
Metabolic pathways
rhk01110
Biosynthesis of secondary metabolites
rhk01120
Microbial metabolism in diverse environments
rhk01230
Biosynthesis of amino acids
Module
rhk_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Kim5_CH04147 (lysA)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Kim5_CH04147 (lysA)
Enzymes [BR:
rhk01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
Kim5_CH04147 (lysA)
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GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
ARQ60139
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All DBs
Position
4192869..4194137
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AA seq
422 aa
AA seq
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MNHFEYRDGILHAENVPVPEIAKAVGTPFYVYSTATLERHYRVFSEAFADMDSMVCYAMK
ANSNQAVLKTLGRLGAGIDVVSEGELRRALAADIPASRIMFSGVGKTPSEMDFALEAGIY
CFNVESEPELEILNQRAVSAGKKAPVSFRINPDVDAKTHSKISTGKKENKFGISWERARA
IYAHAAKLPGIEVTGIDMHIGSQITELQPFDDAFKLLRDLVATLRADGHTIDHVDIGGGL
GVPYKDDNNPPPLPDAYAAIVKNQLRDLNCKVITEPGRLIVGNAGILVTEVLYVKDSGEK
TFVIVDGAMNDLIRPTLYEAYHEIRPVTISAANAPRIRADVVGPVCETGDYLALDREMAM
PKPGDLLAVSTAGAYGAVQAGTYNSRLLVPEVLVKGSDFHAIRPRRTYAELISLDSVPAW
LD
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
gtgaaccatttcgagtaccgcgacggcatccttcacgccgagaacgttcccgttcccgag
atcgccaaggcggtcggcacgccgttctacgtctattccaccgcaaccctggaacgccat
taccgggtcttctccgaagccttcgccgatatggactcgatggtctgttacgcgatgaag
gcgaactcgaaccaggcggtgctgaagacgctgggtcgactcggcgccggcatcgacgtc
gtctcggaaggggagctgcgccgcgcactcgcagccgacattccggcaagccgcatcatg
ttttcaggcgtcggcaaaaccccgtcggagatggatttcgcgctcgaggccggcatctac
tgcttcaacgtcgaatccgaacccgagctcgaaatcctcaaccagcgcgccgtcagcgcc
ggaaagaaggctcccgtctccttccgcatcaacccggatgtcgacgcaaagacgcattcg
aagatctcgaccggcaagaaggaaaacaagttcggcatctcctgggagcgcgcccgcgcg
atctacgcccacgccgccaagctgcccggcatcgaggtcaccggcatcgacatgcatatc
ggcagccagatcaccgagctgcagcctttcgacgacgctttcaagctgctgcgcgacctt
gtcgcgacgctccgcgccgatggccacacgatcgatcacgtcgatatcggcggcggcctc
ggtgtcccctataaggacgacaacaatccgccgccgctgccggatgcctatgcggcgatc
gtcaagaaccagctgcgcgatctgaattgcaaggtcatcaccgagcccggccgcctgatc
gtcggcaatgccggaatcctcgtgaccgaggtgctttatgtgaaggacagcggcgaaaag
accttcgtcatcgtcgacggcgcgatgaatgatctcattcgcccgaccctctacgaggcc
tatcacgaaatccgcccggtgacgatttcggcagcgaacgcgccgcgcatccgcgccgac
gtcgtcggccccgtttgcgagaccggcgactatctggcgctcgaccgcgaaatggcgatg
ccgaagcccggtgatctgctggccgtcagcacggccggcgcctacggcgccgtccaggcc
ggcacctataacagccgcttgctggtccccgaagtcctggtcaagggcagcgatttccat
gcgatacgaccgcgtagaacctatgccgagctgatcagtctcgactccgttcccgcctgg
ctcgactaa
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