Rhizobium sp. Kim5: Kim5_CH04249
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Entry
Kim5_CH04249 CDS
T05501
Symbol
sucD
Name
(GenBank) succinyl-CoA synthetase (ADP-forming) subunit alpha
KO
K01902
succinyl-CoA synthetase alpha subunit [EC:
6.2.1.5
]
Organism
rhk
Rhizobium sp. Kim5
Pathway
rhk00020
Citrate cycle (TCA cycle)
rhk00640
Propanoate metabolism
rhk00660
C5-Branched dibasic acid metabolism
rhk00720
Other carbon fixation pathways
rhk01100
Metabolic pathways
rhk01110
Biosynthesis of secondary metabolites
rhk01120
Microbial metabolism in diverse environments
rhk01200
Carbon metabolism
Module
rhk_M00009
Citrate cycle (TCA cycle, Krebs cycle)
rhk_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
Kim5_CH04249 (sucD)
00640 Propanoate metabolism
Kim5_CH04249 (sucD)
00660 C5-Branched dibasic acid metabolism
Kim5_CH04249 (sucD)
09102 Energy metabolism
00720 Other carbon fixation pathways
Kim5_CH04249 (sucD)
Enzymes [BR:
rhk01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.5 succinate---CoA ligase (ADP-forming)
Kim5_CH04249 (sucD)
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Gene cluster
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Motif
Pfam:
Ligase_CoA
CoA_binding
Succ_CoA_lig
CoA_binding_2
Motif
Other DBs
NCBI-ProteinID:
ARQ60240
LinkDB
All DBs
Position
complement(4299346..4300248)
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AA seq
300 aa
AA seq
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MSILVNKDTKILVQGLTGKTGTFHTEQALAYYGTQMVGGIHPKKGGETWTGAKGESLPIF
ATVAEGKEKTGADATVIYVPPAGAADAIIEAIDAEIPFITCITEGIPVMDMVRVKARLDR
SKSRLLGPNCPGILTPEECKIGIMPGSIFRKGSVGIVSRSGTLTYEAVFQTSNEGLGQTT
AVGIGGDPVKGTEFIDVLEMFLADEATQSIIMIGEIGGSAEEDAAQFLKDEAKKGRKKPM
AGFIAGRTAPKGRTMGHAGAVVSGGKGDAESKIAAMESAGIRVSPSPARLGKTLVEVLKG
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgtctattctcgtcaataaagacaccaagatcctggttcagggtctgaccggcaagacc
ggaaccttccacaccgaacaggcgcttgcctattacggcacgcagatggtcggcggtatc
cacccgaagaagggcggcgaaacctggaccggcgcaaagggcgaaagcctgccgattttc
gcgaccgttgccgaaggcaaggaaaagaccggtgccgacgcgaccgtcatctatgttccg
ccggccggtgcggccgacgccatcatcgaggcgatcgacgccgaaatcccgttcatcacc
tgcatcaccgagggcattcccgtcatggacatggtccgcgtcaaggcgcgcctcgaccgc
tccaagtcgcgcctgctcggccccaactgccctggtattctgacgcccgaagaatgcaag
atcggcatcatgccgggttcgatcttccgcaagggttcggtcggcatcgtctcccgttcg
ggcacgctgacctatgaagcggttttccagacctccaacgaaggcctcggccagacgacc
gccgtcggcatcggcggcgacccggtcaagggcaccgagttcatcgacgtcttggaaatg
ttcctggccgacgaagccacgcagtcgattatcatgatcggcgaaatcggcggttcggca
gaagaagacgctgcgcagttcctcaaggacgaagccaagaagggccgcaagaagccgatg
gccggcttcattgccggccgcacggcgccgaaggggcgcaccatgggccatgccggcgcc
gtggtatccggcggcaagggcgatgcggaatcgaagatcgcagcgatggaatcggcaggc
attcgcgtctcgccgtcgccggctcgtctcggcaagaccttggttgaagtccttaagggc
taa
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