Rhizobium sp. Kim5: Kim5_PA00020
Help
Entry
Kim5_PA00020 CDS
T05501
Name
(GenBank) DNA helicase UvrD-like protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhk
Rhizobium sp. Kim5
Pathway
rhk03420
Nucleotide excision repair
rhk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Kim5_PA00020
03430 Mismatch repair
Kim5_PA00020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhk03400
]
Kim5_PA00020
Enzymes [BR:
rhk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Kim5_PA00020
DNA repair and recombination proteins [BR:
rhk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Kim5_PA00020
MMR (mismatch excision repair)
Other MMR factors
Kim5_PA00020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
AAA_30
DEAD
DUF1601
Motif
Other DBs
NCBI-ProteinID:
ARQ60498
LinkDB
All DBs
Position
pRetKim5a:18385..20190
Genome browser
AA seq
601 aa
AA seq
DB search
MVFVWQNGDLNEEQTDAVLHDGSIFLAACPGSGKTRALTYKIALELSKLESDRHWVVAIT
YTHRAAEEIGERIEKLGVSTDRLWIGTIHSFCLDWIIRPYAIYHDHLANGFRVIDQLETD
DILTELCQQSPNFVRPLDCRYYFTTAGFQLEGANPNRRAAATAVLQRYWDRLQKHRQLDF
EMILSCAHDLIASKPSISVLLGSLFRYILVDEYQDTKEIQYAIVAAILRASAGNTRTFIV
GDPNQAIYGSLGGYAMARPEFAARAGIDLAEKSLSNNYRSSERIVGYFSNYCVAPAVIAA
VGKDRDYGSFISFDREINHQELDDEIVRLIRHNIETLGISPHEICVVGPQWVQLAAITRR
LVAALPEYNFDGPGMAPFSRDQDNIWFKVSRLALTRPEPQMFVRRMRWAGEVLEHFRSVG
IDTSKNSRRDLLRHCNQIEILVDDGLEYLELFFDELLLVLGIDIALFPSLDDHRKAFFER
SRIQIERLENAGVQAVSNIAMFRRVFAARSGITISTIHGVKGAEFDTVIAFALLEGMVPH
FADPKALDSAKKLIYVIASRPRKNLHLIAEVGRVNGIGEPYETTNILAEHIFGYDLIEAI
D
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggttttcgtatggcaaaatggcgacctcaatgaagagcagacggatgctgtccttcat
gacgggagcattttccttgccgcctgtccggggagtgggaagacgagagctctaacgtac
aagatcgccctcgaactgtcgaaactggaaagcgaccgccattgggtggtcgccatcacc
tacacacatcgtgccgccgaagagattggtgagcgtatcgagaagcttggggtgtcgacc
gatcgcctctggatcggcacgatccactcgttttgtctcgactggatcattaggccctat
gctatttatcatgatcatcttgccaacgggttccgggtgattgaccagcttgaaaccgat
gacatcctgacggaactctgccaacaatctccgaattttgtccgccccctggattgtcgg
tattacttcacgaccgctggtttccagcttgagggagcaaatccgaaccgccgagcagca
gcaacagccgtactgcaacgctattgggatcggcttcagaaacaccggcaactggacttt
gagatgatcttgagttgcgcacacgacttgatcgccagcaaaccctcgatttccgtgttg
ctcggatctctattccgctacatcctcgttgacgaataccaggacaccaaagagatccaa
tacgcaattgttgccgccattctgagggcatcggccggaaacacgagaacgtttatcgtc
ggggaccccaaccaggcaatatacggttccttgggcggctatgcgatggctcggccagaa
ttcgcggcgcgcgctggcatcgatctcgccgagaaaagcctgtcgaacaattaccgctcc
tccgaaaggatcgtcggctatttctcgaactactgcgtcgctccggcggtcattgcggct
gtcgggaaagatcgcgactacggaagcttcatttctttcgaccgggagatcaatcaccaa
gagctggatgatgagatcgtgcggctcattcgccacaatatcgaaacgcttggaatttca
ccgcacgaaatctgcgtagtcggaccgcaatgggttcaactggcggcgataactcggcgc
ctcgtggccgcgcttcccgaatataattttgacggcccgggcatggcgccgttttctcga
gaccaagacaatatctggttcaaggtatctcggcttgcattaactcggccagagccacaa
atgttcgttcgaaggatgcgctgggccggcgaagttctggagcatttccgctctgtaggt
atcgacacgtcgaaaaactctcgacgggatcttttgcgccactgcaatcaaattgaaatc
ctggtcgatgatggcctcgaatacctggagctgttttttgacgagctgctgctagtgctc
gggatcgacattgcgctatttccgtcgctcgatgatcatcgcaaggcatttttcgaacga
tcgagaatccaaatcgaacggctggaaaacgccggtgtgcaagcggtatccaacattgcg
atgttcaggcgcgtgttcgcggcacgctccggaattacgatatcaaccattcacggtgtc
aaaggggctgagttcgataccgtgatagcatttgcgctgctcgaaggcatggttccgcat
ttcgctgatcctaaggcgctagatagcgccaagaagctcatatatgtgattgcatcgcgc
ccgcgaaagaaccttcatttgattgccgaggtcgggcgggtcaatggaatcggcgagccg
tacgagacgacaaatatccttgccgagcatattttcggttatgatctgatagaagctatt
gactaa
DBGET
integrated database retrieval system
