Rhizobium sp. Kim5: Kim5_PB00201
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Entry
Kim5_PB00201 CDS
T05501
Name
(GenBank) DNA topoisomerase I protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rhk
Rhizobium sp. Kim5
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhk03032
]
Kim5_PB00201
03400 DNA repair and recombination proteins [BR:
rhk03400
]
Kim5_PB00201
Enzymes [BR:
rhk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Kim5_PB00201
DNA replication proteins [BR:
rhk03032
]
Prokaryotic type
DNA Topoisomerases
Kim5_PB00201
DNA repair and recombination proteins [BR:
rhk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Kim5_PB00201
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
ARQ61165
LinkDB
All DBs
Position
pRetKim5b:216131..217138
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AA seq
335 aa
AA seq
DB search
MNAEVITELGLIYVSDTEPGIRRRRKGKGFSYVMPDGTTLSDELQRARIGALGLPPAYEN
VWICLYENGHLQATGIDARGRKQYRYHKDWQSFRSAGKFHQLIEFGRALPKIRRTVLRHL
DTGTEDVNGVLAALTTLLDEAHLRVGNQAYVRENGTYGATTLLKRHLKIVDGRIELKFRA
KGGKRVQRSLKHPRLQKILEEIADLPGRQLFVWKDESGALKPVDSGRLNAYLTEISGIPI
SAKTFRTWAGSLAAFGAAREKIVAGGRPTVKDMSEAAAEALHNTPAISRSSYIHPAIIAL
AGNDHPLIEGGNEPLRGLRAEENRLLDFLTREIEE
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccgaagtcatcaccgaacttggcctcatctatgtcagcgataccgaaccgggc
atccgcagacgaaggaaaggcaagggcttcagctatgtcatgccggacggtacgacgctt
tccgatgagttgcagcgggcgcgcatcggcgcgctcggcctgccgccggcctatgagaat
gtatggatctgtctctacgagaacggccacctccaggcgaccggcatcgatgcgcgcggg
cgcaagcaatatcgctatcacaaggactggcaatccttccgcagcgccggaaaattccac
cagctgatcgaattcggccgggcattgccgaagatccgccgcaccgtgctgcgccatctc
gacaccggtacggaagatgtcaacggcgtgctggcggcactgacgacgctgctcgacgag
gcgcatctgcgggtcggcaaccaggcttatgtcagggagaacggcacctatggtgcaacg
acgctattgaagcggcacctgaagatcgtcgacgggcggatcgagctgaaattccgcgcc
aagggcggcaagcgcgtccagcgcagcctcaagcatcccaggctgcagaagatcctggaa
gagatcgccgacctgcccggccgtcagcttttcgtctggaaggatgaaagcggcgcgctg
aaaccggtcgattccggccggctgaatgcctatctgaccgagatatcgggcattccgatt
tccgctaagacattccgcacttgggccggatcgttggcggccttcggtgcggcccgcgaa
aaaattgtcgccggtggccggccgacggtgaaggacatgtcggaggctgcggccgaagcg
ctgcacaatacgccggcaatctcacgctcgagctatatccatccggcaatcatcgcgctt
gccggcaatgaccatcctttgatcgagggtggcaacgagccgctgcggggcttgcgggcg
gaagaaaacaggctacttgatttcctgacacgcgagatcgaggaatga
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