KEGG   Rhizobium sp. Kim5: Kim5_PC00563
Entry
Kim5_PC00563      CDS       T05501                                 
Name
(GenBank) type VI secretion system Rhs element Vgr family protein
  KO
K11904  type VI secretion system secreted protein VgrG
Organism
rhk  Rhizobium sp. Kim5
Pathway
rhk03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:rhk00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    Kim5_PC00563
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:rhk02044]
    Kim5_PC00563
Secretion system [BR:rhk02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   Kim5_PC00563
SSDB
Motif
Pfam: Phage_GPD Gp5_trimer_C Phage_base_V Gp5_C DUF6484
Other DBs
NCBI-ProteinID: ARQ61973
LinkDB
Position
pRetKim5c:complement(613538..615844)
AA seq 768 aa
MADDRKTTVQTPLGSEALTFTHLIGGDAVSRCFAFTVGFISSGENVDALKLLGKSLSVEG
EGGDKKRWFSGLVTDFRLTRIEERFAYYEAEVRPWLWLLGNSTDCRIFQNMSVVEIVEKI
FSKYKAAKFEKRLQGSYEAREYCVQYDETDLDFVQRLLEHEGIMYFFEYDEGEHTLVLAD
AMNKLKPAPGYGSVKFRAEGDPVRRDEEYMTDWVSTSSVLPGTFAHTDYDFTKPGADLMA
QSAQPFSHAEAQGEHYRHPGAHLTVGRGDAVAVVRREEIQAAHQRIAAGGTVRGLASGCT
FKLENFPRKDQNAEYVVLRADYRLFDPGYRPAAYAEEETFRATFQVAPTSISYRPPRNTI
RPIMRGPQTATVVGPAGEEIFTDKYARVKVQFHWDRLGKKDQNSSCFVRVSQTWSGAGWG
FIQIPRIGQEVIVDFLEGDPDRPIITGRVYNGKEMPPYELPGHATQSGLKTNSSPGGGGW
NELRFEDKAGSEEVYFQAQKDHNLLIKHDRSKLVQHDQSDRIDNNAKHSVGVNLDEDVGN
NKTTKVGVDRTVNIGSNDTETVGVNRSLTVGANETISIGSNSTETIGANHTQTVAIVQTV
TVGAARVDSVGATETRSVGATQSNTIGASRSVSVGAGQSHDIGASDSWKIGSDQSVSIGG
GQTSSIGKARSAKISDDDSTEIGGSRAVKVARGSLVEVGEDGAIKIGQDLLIEAGDSVVI
KCGSASIAMKKDGTISIEGKDISINASGKFNGKASGEVTWKGSKINHN
NT seq 2307 nt   +upstreamnt  +downstreamnt
atggctgatgatcgcaagacaaccgtccagacgccgctcggatccgaagcgctgactttc
acgcatctcatcggcggcgatgcggtcagccggtgttttgccttcactgtcggcttcatc
agttccggagagaatgtcgacgcactgaagctgctcggaaaatccttgtcagtagaaggc
gaaggcggagacaagaagcgctggttcagcgggctggtcaccgattttcgcctgacgcgc
atcgaggaaaggtttgcctactacgaggcggaggtgcggccctggctttggctgctcggc
aacagcaccgattgccgcattttccaaaatatgagcgtcgtcgaaatcgtcgagaagata
ttctcgaaatacaaggcggcaaaattcgagaagcggttgcagggttcctacgaggctcgg
gaatactgcgtgcaatatgacgaaaccgacctcgacttcgtgcagcggctgctcgagcac
gaaggcatcatgtatttcttcgaatatgatgagggcgaacacactctggttcttgccgat
gccatgaacaagctgaagccagcgccaggctatggcagcgtcaagttccgggccgagggc
gaccccgtgcgccgggatgaggaatatatgacggactgggtttcgaccagttccgtcctg
cccggcaccttcgcccacacggactatgacttcaccaaaccgggcgccgacctcatggcg
caatcggcgcaacctttctcacacgcggaagcacagggtgaacattatcgccatcccggc
gcgcatctgacggtcggccgcggcgacgcggttgccgtcgtgcggcgggaggaaattcag
gcggcacatcaacggatcgccgctggcggcacggtgcggggtctggcttccggatgcact
ttcaagctcgagaatttcccgcgcaaggaccagaacgcggaatacgtcgtgctgcgcgcc
gactatcgtctcttcgatccgggttaccggcccgcagcctatgcggaggaggaaaccttt
cgggcgacattccaggtggctccgacctccatcagttatcggccgcctcgcaacacgatc
cggccgatcatgcgcgggccgcagactgcgaccgtggttggccctgccggcgaggagatc
ttcaccgacaaatatgcacgcgtgaaagtgcagttccactgggaccggctcggcaagaag
gaccagaacagctcctgtttcgtgcgcgtctcgcaaacctggagcggtgcgggctggggg
tttatccaaatcccccgtatcggtcaggaagtgatcgtcgactttctcgaaggggatcct
gaccggccgatcatcaccggcagggtgtataacggcaaggaaatgccgccctacgaactg
cccggacatgccacccaatccgggttgaagacgaattcgtctcctggcgggggcgggtgg
aacgaactgcgtttcgaagacaaagccggatcggaggaggtttatttccaggcgcagaaa
gaccacaacctcctgatcaagcacgatcgcagcaaactcgtccaacacgatcagtcggat
cgcatcgacaacaacgccaagcactccgtcggcgtgaacctcgacgaggatgtcggcaac
aacaagacgaccaaggttggtgtcgaccgcaccgtcaatatcggatcgaatgataccgag
acggtgggggtcaatcgatctctgactgtgggcgccaatgagacgatcagtatcggctca
aattccacagagacgatcggcgccaatcacacccagaccgttgccatcgtccagacggtg
accgttggcgccgcacgcgtcgatagcgtcggcgcgacagagaccagatcggtcggcgcg
acccaatcgaatacgatcggcgcgtcccgttccgtcagcgtcggtgccggccagagccac
gacatcggcgcctccgacagctggaaaatcggctcagaccagagcgtgtcgatcggcggc
gggcagacaagcagcatcggcaaggcgcgtagcgccaagatcagcgatgacgattccacg
gagatcggcggaagtagggcggtgaaagtcgccaggggcagtcttgtcgaggtgggtgaa
gacggagcgatcaagatcggtcaggacctgctgatcgaagcgggggactcggtcgtcatc
aagtgcggctcagcaagcatcgcgatgaagaaggacggcacgatctcgatcgaaggcaag
gacatttcgatcaacgcctcgggcaaattcaatggcaaggcctcgggagaggtcacatgg
aagggcagcaagatcaatcataattga

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