Rhizobium sp. Kim5: Kim5_PD00143
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Entry
Kim5_PD00143 CDS
T05501
Name
(GenBank) AMP-dependent synthetase/ligase protein
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
rhk
Rhizobium sp. Kim5
Pathway
rhk00061
Fatty acid biosynthesis
rhk00071
Fatty acid degradation
rhk01100
Metabolic pathways
rhk01212
Fatty acid metabolism
rhk02024
Quorum sensing
rhk04146
Peroxisome
Module
rhk_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Kim5_PD00143
00071 Fatty acid degradation
Kim5_PD00143
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Kim5_PD00143
09145 Cellular community - prokaryotes
02024 Quorum sensing
Kim5_PD00143
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
rhk01004
]
Kim5_PD00143
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rhk04147
]
Kim5_PD00143
Enzymes [BR:
rhk01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Kim5_PD00143
Lipid biosynthesis proteins [BR:
rhk01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Kim5_PD00143
Exosome [BR:
rhk04147
]
Exosomal proteins
Exosomal proteins of breast milk
Kim5_PD00143
Exosomal proteins of breast cancer cells
Kim5_PD00143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
ARQ62151
LinkDB
All DBs
Position
pRetKim5d:complement(152094..153611)
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AA seq
505 aa
AA seq
DB search
MAYRNYRTILHALLDWGQRTPDAVAVTDGDTEISYASLASVVEAASRRLVSLGVQRQDRV
VLVGNNTWQWVVCYLATMRIGAISVPMNNRLAPAQVGELLEILGTRIVLADDLHLSMFKE
CAEVDVFSITGSAGRSFFSLETATELPALPETSEDALISFTSGTTGVPKGAVITHKALRQ
NAEVFADLIGDDPSPSTLIVAPLFHNTGFVDQLCTMLFLGGRSDLLPRYRTQGAIEACKR
RPVSFVTAVPSVLRMMMTAEGAEAIYGPARLVLFGGSPMPAPWSLEMHQRWPNLRLVHGY
GLTEFTSCCTLLPPEFILSHGDSIGYPAKGVELRLVDENGQDVPDGVPGEIWVRGETRMR
EYWRRPDVTAEKIQGEWLRTGDLGERRELGLLYHVGRRDDVINRGGEKILPSFIEAAMAK
VPEVAQAVVFGIPHPVLQNSIVAALEPRPETKVNVPALLDFLRTQLPGYAVPETIIVGND
LPRTASGKLDRRAVRAAYLSSAQGH
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
gtggcttaccgtaactatcggacgattcttcatgccttgctcgactggggccagcgcact
cctgacgctgtcgcagtcaccgatggggatacggagatctcgtacgcgtcattggcttcc
gtagtggaagccgcgtcaaggcggctggtctctctcggtgtacaaaggcaggaccgggtg
gtccttgtcggcaacaatacctggcagtgggtcgtctgctacctggcgacgatgcgcatc
ggcgcaatctccgtgccaatgaacaatcggctggcgcccgcacaagtcggcgaattgctg
gagatactggggacacgtattgtcctagcggacgacctccatttgagcatgtttaaggaa
tgtgccgaagtcgacgtgttctcgatcaccggctctgccggtaggtccttcttctcgctt
gaaacagccacggaactccctgccctgccagagacgtcggaagatgctttgattagcttc
acctccggcaccacaggggttcccaagggtgcagtcatcactcataaggccctacgacag
aacgcggaggtattcgctgacctaataggcgatgacccgtcgccctcgacgttgattgtc
gcccccttgtttcacaataccggctttgtcgatcaactctgcaccatgctctttctcggc
ggccgctccgatcttctgccacgatatcggacgcaaggggccattgaggcatgcaagcgc
cgtcccgtcagcttcgtcacggcggtcccaagcgttttgcggatgatgatgacagccgaa
ggcgccgaggccatttacgggccggcgcggctggttctgttcggcggttcaccgatgccg
gcgccatggtccttggaaatgcatcagcgctggccaaacctccggttggtgcatggctat
ggcctgaccgaattcacgtcgtgctgcactcttcttccgcctgaattcatcctaagccac
ggcgactcgatcggctatccggccaaaggcgtggagttgcggctggtggatgagaatggt
caagatgtgccggacggggttccgggggagatttgggtccgtggcgaaacgcgcatgcgc
gaatactggcgccgccccgacgtcaccgccgagaaaatccaaggcgaatggcttcgaacc
ggcgatctcggggaacgtcgcgagcttggccttctatatcacgtcggccgccgggatgac
gtgatcaacaggggtggggaaaagattcttccctcctttatcgaggcggcaatggcaaag
gtccccgaagtcgctcaagctgtggtatttggcattcctcacccagtgctgcagaacagc
atcgtcgccgcgctcgagcctcgtccagagacaaaggtaaatgtcccggcgcttctggat
ttcctgcgtacgcaacttccgggctatgccgtgccggaaacgattatcgtcggcaacgac
cttccgcgcacggcctcaggaaagcttgacagacgtgccgtgcgcgccgcctacctctca
tccgcgcaaggtcactag
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