Rhizobium sp. Kim5: Kim5_PD00341
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Entry
Kim5_PD00341 CDS
T05501
Name
(GenBank) NAD-dependent epimerase/dehydratase family protein
KO
K17947
dTDP-L-rhamnose 4-epimerase [EC:
5.1.3.25
]
Organism
rhk
Rhizobium sp. Kim5
Pathway
rhk00523
Polyketide sugar unit biosynthesis
rhk01110
Biosynthesis of secondary metabolites
rhk01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
Kim5_PD00341
Enzymes [BR:
rhk01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.25 dTDP-L-rhamnose 4-epimerase
Kim5_PD00341
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Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
NAD_binding_10
NmrA
Polysacc_synt_2
NAD_binding_4
adh_short
RmlD_sub_bind
KR
TrkA_N
Sacchrp_dh_NADP
adh_short_C2
3HCDH_N
Motif
Other DBs
NCBI-ProteinID:
ARQ62346
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Position
pRetKim5d:343540..344643
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AA seq
367 aa
AA seq
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MTILITGGCGFIGRHVAEELLQSGYEVRVLDALIDQVHADAELVVPEGAEVIRGDVRDKD
AVRAALANVDGVIHLAAEVGVGQSMYEIARYVSCNDLGTAVLLEAMIGMPVRKIVVASSM
SVYGEGLYLTGDGRRLGYVRRRSHHIKRGQWDPLGPDDEPLTPVATDEEKPVDLASIYAL
TKYAQEKQVLIFGEAYGLDAVALRLFNVFGAGQALSNPYTGVLANFGSRLANRQPPMIFE
DGKQRRDFVHVRDVARAFRLALEKPAASGHVINIGSGLAYSIADVAMLLADAMGVPEIAP
DIMNKARSGDIRNCFADISKARELLGFEPKYHLENSLAPFVDWVRQTGAIDRGAEMKRQL
EERGLVS
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgacgatcttgataacaggagggtgcggcttcatcggccgccatgttgctgaagaactt
ctgcaaagcggctatgaggtgcgcgtcctcgatgccttgatcgaccaagtgcatgccgac
gccgagcttgtcgtgccggagggtgccgaggtcattcgcggcgacgtcagggacaaggac
gcggtgcgcgcggcgctcgcgaatgtcgatggcgtcattcatcttgccgccgaagtcggc
gtcggacaatcaatgtatgaaattgcccgctacgtcagctgcaacgacctcggaacggcg
gtgctgctcgaagccatgatcggcatgcctgtccgaaagatcgtcgtcgcttcctccatg
agcgtttatggagaagggctttatctgaccggggacggcagacggctcggctatgtcagg
cggcgaagccaccatatcaagcgtggccaatgggatccgctcggcccggatgacgagccg
ttgacgcccgtcgccaccgacgaggagaagccggtcgacctggcttcgatctacgccttg
acaaaatatgcccaggaaaagcaggtcttgatcttcggcgaagcctatggcctggatgcc
gtcgcgctgcgacttttcaacgttttcggcgccggccaagccctttccaacccctatacc
ggcgtgctcgcaaatttcggctcgcgcctcgccaaccggcagccgccgatgatcttcgag
gatggcaagcagcggcgcgatttcgtccatgtgcgcgacgtggcgagggccttccggctg
gctctggagaagcccgcggcgtcgggccacgtgatcaatatcggcagcggcctggcctat
tcgatcgccgacgtcgcaatgcttcttgccgacgcgatgggcgtgccggagatcgccccc
gatatcatgaacaaggcgcgttccggcgacatacgcaattgctttgccgatatctccaag
gcacgtgaactgctcggcttcgagcccaaataccatctcgaaaattcgctcgctcctttc
gtcgactgggtccggcagacaggagcgatcgaccgtggcgccgagatgaagcggcaactt
gaagaacgggggctggtttcatga
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