Rhizobium sp. Kim5: Kim5_PD00394
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Entry
Kim5_PD00394 CDS
T05501
Symbol
thiC
Name
(GenBank) phosphomethylpyrimidine synthase
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
rhk
Rhizobium sp. Kim5
Pathway
rhk00730
Thiamine metabolism
rhk01100
Metabolic pathways
rhk01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
Kim5_PD00394 (thiC)
Enzymes [BR:
rhk01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
Kim5_PD00394 (thiC)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-ProteinID:
ARQ62399
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All DBs
Position
pRetKim5d:complement(414047..415879)
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AA seq
610 aa
AA seq
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MNIVAPQLTPVVTTGSLPASTKIVKPGTLYPDLRVPMREISLHPTSGEPPVTVYDSSGPY
TDPAHVVSIDAGLPRLREAWVRARGDVEACEGRVVKPEDNGFATGERLTPEFPIRNTPLK
AKAGRAVTQLAYARAGIITPEMEFIAIRENLGRQAAKEALARDGESFGAHVPDFVTPEFV
RREVAEGRAIIPANINHPETEPMIIGRNFLVKINANIGNSAVTSSMAEEVEKMVWAIRWG
ADTVMDLSTGRNIHNIREWIIRNSPVPIGTVPLYQALEKVNGIAEDLTWEVYRDTLIEQA
EQGVDYFTIHAGVRLAYIPLTVNRVTGIVSRGGSIMAKWCLHHHKESFLYEHFEEICDIC
RAYDVSFSLGDGLRPGSIADANDAAQFAELETLGELTRIAWAKDCQVMIEGPGHVPMHKI
KENMDKQLKVCGEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWFGTAMLCYVTPKEHLG
LPDRSDVKTGVITYKIAAHAADLAKGHPAARIRDDALSRARFEFRWEDQFNLSLDPDTAR
SFHDETLPKEAHKVAHFCSMCGPKFCSMRISHDIRAEAQKEGLEAMAAKYRDGGDLYMPV
AEATKPPAGE
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgaatattgttgcaccccagcttacccccgtcgtcaccaccggctcgcttccggcctcg
accaagatcgtcaaacccggaaccctctatccggatctgcgcgtgccgatgcgcgaaatc
agccttcacccgacctccggcgagccgccggttacggtctatgattcctccggcccctat
accgatccggcccatgtggtctccatcgacgccgggctgccgcgtttgcgcgaggcctgg
gttagggcgcgcggcgacgtcgaagcctgtgaaggccgtgtggtgaagcctgaagacaat
ggttttgccacgggcgagcggctgacgccggaatttcccattcgcaacacgccgcttaag
gcaaaggccggccgcgccgtcacccagctcgcctatgcgcgtgccggcattatcaccccg
gaaatggagtttatcgcgatccgcgaaaacctcggccggcaggccgcgaaggaggcgctc
gcgcgcgacggcgagagcttcggcgcgcatgttccggatttcgtgacgcccgaattcgtg
cgccgggaagtcgccgagggcagggcgatcatccccgccaatatcaaccaccccgagacc
gaaccgatgatcatcggccggaacttcctcgtgaagatcaacgccaatatcggcaattcg
gcggtcacctcgtcaatggcggaagaggtggagaagatggtctgggcgatccgctggggc
gccgacacggtcatggacctttccaccggccgcaacattcacaacatccgggagtggatc
attcgcaattcgccggttccgatcggcactgttccgctttaccaggcgctcgaaaaggtc
aacggcattgccgaagatctgacctgggaagtctatcgggatacgctgatcgaacaggcc
gagcagggcgtcgattatttcaccatccatgccggcgtgcggctggcctatatcccgctc
accgtcaatcgcgtcaccggtatcgtctcacgcggcggctcgatcatggccaagtggtgt
ctgcatcaccacaaggagagtttcctctacgagcattttgaggaaatctgcgacatctgc
cgtgcctatgacgtctccttctcgctcggcgacggtttgcgtccggggtcgatcgcggat
gccaatgacgcagcacaatttgccgagctggaaacgcttggcgagctgacaaggattgcc
tgggcgaaggactgccaggtgatgatcgaaggccccggccatgtgccgatgcacaagatc
aaagagaatatggacaagcagctcaaggtctgcggcgaagcgcccttctatacgctcgga
ccgctgacgaccgacatcgcgccgggctatgatcacatcacctccggcatcggcgcagcc
atgatcggctggttcggcacagccatgctctgctacgtcacgccgaaggagcatctgggg
ctgcccgaccgcagcgacgtcaagaccggcgtcatcacctacaagatcgcagcgcatgct
gccgatcttgccaaggggcatccggccgcccgcatccgcgacgatgcgctgtcgcgggcg
cgcttcgaattccgctgggaggaccagttcaacctctccctcgacccggatacggcgcgt
tccttccacgacgagaccctgccgaaggaggcgcacaaggtggcgcatttctgctcgatg
tgcggcccgaaattctgctccatgcgaatttcccacgacattcgcgccgaagctcagaaa
gagggattggaagcgatggcggccaagtaccgcgatggcggcgatctctacatgccggtc
gcagaggcgacgaaaccgcccgccggagaatga
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