Rhizobium favelukesii: LPU83_0057
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Entry
LPU83_0057 CDS
T03046
Symbol
helO
Name
(GenBank) helicase protein
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
rhl
Rhizobium favelukesii
Brite
KEGG Orthology (KO) [BR:
rhl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhl03019
]
LPU83_0057 (helO)
Enzymes [BR:
rhl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LPU83_0057 (helO)
Messenger RNA biogenesis [BR:
rhl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LPU83_0057 (helO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
AAA_30
AAA_19
ResIII
LAM_C
Motif
Other DBs
NCBI-ProteinID:
CDM55748
UniProt:
W6RAQ1
LinkDB
All DBs
Position
complement(57699..60155)
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AA seq
818 aa
AA seq
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MTSLPELPVSHALPTIGTALGAQSRAVLSAPPGAGKTTLVPLYLLSQDWRGDGKIVLLEP
RRLAARAAASRMASLLGETVGETVGYRMRLDTRISAKTRIEVVTEGVFARMILDDPELSG
VSTVIFDEFHERSLDADFGLALALDVQSALRDDLRVLVMSATLDVARVAALLDQPPVIES
MGRSYPIDIRYQDRPGGERIEDAMARAIVDAHTRESGSILAFLPGQAEIARTEERLDGRF
GPQTLIAPLYGNLTQTEQDAAIRPAEPGMRKVVLATSIAETSITIDGVRIVIDSGLQRLP
VFEASTGITRLETVRVSRASADQRAGRAGRTEPGIAIRLWHQGQTAALAAFTPPQILSSD
LSGLVLDLAHWGVQDARSLSFVDQPPETTLSEARALLLQLGALGKDGALTARGKMMRDLA
LPPRLAAMVISAGETGHARDAAALAVLLTEQGLGGPSLDLEERMRRFRSERGDRAEGSRQ
LAARLAKGLDVAKAMEPGQTGRLLLHAFPDRIALQRGGRGRFLMTNGRGAELPETDRLAG
SQMLVIADLTGRAARGRILAAAEVSRADIEEELPDAISTGDQTFFDRQNRQVRARRATRL
GAIVFDETPLPRPTGEAVSRALAEGVRELGLEQLPFSKEAIQLRERMGFLHRSIGDPWPD
LSDEALLSRLDEWFVPYQMDARGISDISPSGLSNGLMALIPHGLQRDLSRLAPTHFEAPT
GQRHPIQYHGEEPTLTIRVQELFGLKHHPAIGDGRLPLLLELTSPAHRPIQTTRDLPGFW
AGSWKDVRADMRGRYPKHPWPERPDDAMPTTRVKPRDT
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgacttccctgccggagcttccggtttcgcatgctcttcccacaatcgggacagcactc
ggcgcccagagccgcgcagtgctttcggcgcctccaggcgccggcaagacgacgctcgtt
ccactctatcttctgagtcaggactggcgcggcgacggcaagatcgtgctcctggagccg
cggcgcctggcggcccgcgctgcagcaagccgcatggcgtcgctgcttggcgagactgtg
ggggagacagtcggctatcgcatgcgcctcgacaccagaatatccgccaaaacccgcatc
gaggtcgtcaccgaaggcgtgttcgcccgcatgatcctcgacgacccggaactctccggt
gtctcgaccgtcatcttcgacgagttccacgagcgttcgctggacgccgactttggcctt
gcgctggcgctcgacgtgcaatccgccttgcgcgatgacctgcgcgtgcttgtcatgtcg
gcgacccttgacgtcgcccgcgtcgcggcacttctcgaccagccgcccgtgatcgaaagc
atgggccgaagctatccgatcgacatccgctatcaggatcggccgggcggcgagcgcatt
gaagacgcgatggcgcgcgccatcgtggacgcgcacaccagggagagcggatcgatcctc
gccttcctgcccggccaggcggagatcgcccgcaccgaggagcggctcgacggccgcttc
gggccacaaacgctgatcgcaccgctttacggcaatctgacacaaacggaacaggacgct
gcaatccgaccggccgagcccggtatgcgcaaggtcgtgctcgccacctcgattgccgag
acgtcgatcaccattgacggcgtgcggatcgtcatcgacagcggcctgcagcggcttcct
gtgttcgaggcatcaaccggcatcacacggctggagacggtgcgtgtttcacgcgcctcg
gctgaccaacgcgccggacgtgcggggcgaaccgagcccggtatcgccatccgtctgtgg
caccaggggcagacggcggcattggcagcattcacaccgccgcagattctctccagcgat
ctttctggccttgtccttgatctggcccattggggtgttcaagacgcccgctcgctgtcc
tttgtcgaccagccgccggagacgacgctttcggaagcgcgcgcgctgttgctgcagctc
ggcgcgctcggcaaggacggtgcattgactgcgcgcggaaagatgatgcgcgaccttgcg
ctgccaccgcgtctggccgccatggtgatctcggccggcgagaccgggcatgcaagggat
gcggcggcgcttgccgtgctgctgaccgaacaaggcctcggcggcccgagccttgatctg
gaagagcggatgcgacgtttccggtcggagcgcggcgatcgcgccgagggctcgcgtcag
ctggcggctcgactggccaaaggtctcgatgtcgcaaaggcaatggaacccggccagacg
ggaaggttgctgctgcacgcctttcctgaccgaatcgcgctccagcgcggcggcagaggc
cggttcctcatgacgaacgggcgcggcgcggagctgccggagaccgaccgacttgccggc
agccagatgctcgtcatcgccgacctgacgggccgcgcagcgcgggggcgcatcctggcg
gcagcagaggtttcgcgcgccgacatcgaggaagagctgcccgatgccatttcgactggc
gaccaaaccttcttcgaccggcaaaaccggcaggtcagggccagacgggcgacgcggctc
ggcgccatcgtcttcgacgagacgccgctgccccgtccgaccggtgaggccgtcagccgc
gctctggcggaaggcgtgcgcgagctggggttggaacagcttcccttttccaaggaggcc
atacagcttcgcgaacgcatgggctttcttcaccgcagtatcggcgacccgtggcctgac
ctcagcgacgaagcgctgctttcgcggctggacgagtggttcgttccctatcagatggat
gctcgggggatttccgatatctccccatccggcctttcgaacggtttgatggcattgata
ccgcacgggctgcagcgcgatctttcgcgcctcgcgccgacgcatttcgaagcgccgacg
ggacagcgccatccgatccagtatcacggcgaagagccgactttgacgatccgtgtgcag
gaactcttcggcctcaagcaccatccggcgatcggtgacggccgactgccgctgcttctc
gagctgacatcgccggcacatcggccgattcagaccacccgcgacctgcccggcttctgg
gccggctcgtggaaggatgtgcgcgccgacatgcgcggccgctatcccaaacacccctgg
cctgagcggccggacgacgccatgccgacgacaagggtaaaacctcgtgatacatga
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