Rhizobium favelukesii: LPU83_0495
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Entry
LPU83_0495 CDS
T03046
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
rhl
Rhizobium favelukesii
Pathway
rhl02020
Two-component system
rhl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rhl00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LPU83_0495 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LPU83_0495 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhl03021
]
LPU83_0495 (rpoN)
Transcription machinery [BR:
rhl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LPU83_0495 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
CDM56178
UniProt:
W6RBV1
LinkDB
All DBs
Position
481499..483058
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AA seq
519 aa
AA seq
DB search
MALSANLFLRQNQSLVMTPQLMQSIQLLQMTHFELTQFIAQEVEKNPLLELPSNEADAIT
ERGGAEDEAYAPQVEEPGDGGYDSRTEVLSGDWYESGNTGGASRLSDELDANYANVFPDD
GVPQRADAPELISQWKSMPGNGEGAESYDLDDFVAGQISLRDHLAQQLPFILPDMSDRLI
AQYLVDQLDEAGYLQGDATEAADRLGASVDDVERVIAALQTLDPPGVFARNLAECLAIQL
RQKDRFDPAMQALVCNLELLGRRDFATLKRLCGVDEEDLLDMLGEIRQLNPKPGAGFEAG
MSEAIMPDVVVRAGSDGGWLVELNPDTLPRVLVNQAYFSKVTKSGDDYAFLSECLQTANW
LTRSLDQRAKTIMKVASEIVRQQDAFLMDGVDHLRPLNLKTVADAIKMHESTVSRVTSNK
YMLTPRGLFELKYFFSVSISAVEGGDSHSAEAVRHKIRALIMQESPDAVLSDDDIVDILR
KGGVDLARRTVAKYREAMNIASSVQRRREKRALAKVAGF
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggcactgtcggccaatcttttcctgcgccagaaccagtcgctggtgatgacaccgcaa
ctgatgcagtccattcagttgctgcaaatgacgcatttcgagctgacgcagttcattgcc
caggaagtcgaaaagaacccactattggaacttccgtcaaatgaagcggacgcaatcacc
gagcgcggaggcgcggaggatgaggcctacgcaccgcaggtggaagaacccggcgatggc
ggctacgacagccgaaccgaggttttgtcgggcgactggtacgagagtggcaacaccggc
ggtgcaagccgcctcagcgacgaactcgatgccaactatgccaacgtctttcccgatgac
ggcgtcccgcagcgcgccgacgctccagagctgatcagccagtggaagtcgatgcccggc
aacggcgaaggggcagaaagctacgatctcgatgatttcgttgccggtcagatctcgcta
cgcgatcaccttgcccagcaattgccctttatcttgcccgacatgtccgatcgcctgatc
gcccagtacctcgtcgatcagctggacgaggcaggctatctccagggcgatgcgacggaa
gctgccgataggctgggcgcgagcgtcgacgatgtcgagcgcgtgatcgccgccttgcag
acgctcgatccgcccggcgttttcgcacgcaacctggccgaatgcctggcgatccagctt
cggcagaaggaccgctttgaccccgccatgcaggcgctggtctgcaatctcgagcttttg
gggcggcgcgacttcgccacgctgaagcggctttgtggcgtggacgaagaagatctgctc
gatatgttgggcgagatccgccagctcaatccgaagccgggcgcgggcttcgaagccgga
atgtcggaggcgatcatgcccgacgtcgtcgtgcgcgcaggctccgacggcggctggttg
gtcgagcttaatcccgacacgctgccgcgcgttctggtcaatcaagcgtatttttccaaa
gtcacgaagagtggtgacgattacgcctttctgtcggaatgtctgcagaccgccaactgg
ctgacccggagcctcgatcagcgtgccaagacgatcatgaaggtcgcaagcgagatcgtt
cggcagcaggatgccttcctgatggacggtgtcgatcacctgcgaccgctcaaccttaag
acggtggccgacgccatcaagatgcacgaatccaccgttagccgcgtgacgtcgaacaag
tatatgctgacgccgcggggtctcttcgagctcaaatatttcttcagcgtctccatcagt
gctgtcgaaggcggcgacagccattcggccgaggctgtgcgccataagattcgcgccctt
atcatgcaggaaagcccggatgccgtgctttccgatgacgatatagtggatatcctgagg
aagggcggcgtcgatcttgcccgccgtacggtcgcgaagtaccgtgaggcaatgaatatc
gcttcgtccgtccagcgcaggcgggagaaacgggccttggccaaggtcgcgggcttttga
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