Rhizobium favelukesii: LPU83_1679
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Entry
LPU83_1679 CDS
T03046
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rhl
Rhizobium favelukesii
Pathway
rhl03030
DNA replication
rhl03430
Mismatch repair
rhl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LPU83_1679 (dnaE1)
03430 Mismatch repair
LPU83_1679 (dnaE1)
03440 Homologous recombination
LPU83_1679 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhl03032
]
LPU83_1679 (dnaE1)
03400 DNA repair and recombination proteins [BR:
rhl03400
]
LPU83_1679 (dnaE1)
Enzymes [BR:
rhl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LPU83_1679 (dnaE1)
DNA replication proteins [BR:
rhl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LPU83_1679 (dnaE1)
DNA repair and recombination proteins [BR:
rhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LPU83_1679 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
CDM57344
UniProt:
W6R8U4
LinkDB
All DBs
Position
1642441..1645941
Genome browser
AA seq
1166 aa
AA seq
DB search
MAGAEKDAASGFIGGTPGFVHLRVHSAYSLLEGALPLKKILYKASSDSQPAIAITDTNNL
FVALEFSQKAMDEGLQPIIGCQVSIDMEDGLETERRGGQQALVKLPSLVLLAATDAGYER
LVDLVSRAYLGGEGNGQSIHIRASWLDEIGADGLIALTGALTGPIDMALKDGHAAQAEAR
LLLLKRHFSDRLYVELQRHGTYDKRHEQKVVGLAYQHDLPLVATNEAFFPTRDDYDAHDA
LMAVAHNAIVSDDTRFRLTPDHYLKSRAEMAKLFADLPEALENTIEIARRCSFILKTRKP
ILPRFTGATTDPEEAEREEALELRRQAEEGLDNRLATLGMSPGYEEKEYRDRLEFELSVI
ERMKFPGYFLIVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFL
NPERVSMPDFDIDFCQDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMP
YGQVDKICKLVPNNPANPTPLSKAIEEEPKLQEEADKEPVVARLLDIAQKIEGLYRHAST
HAAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVD
FVAKRGINVDLASIPLDDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALV
ALYRPGPMENIPTYNARKHGEEEVESIHPTIDYLLKETQGVIVYQEQVMQIAQVLSGYSL
GEADLLRRAMGKKIKAEMDQQRERFVDGAVKNGVSKPQADNIFELLAKFANYGFNKSHAA
AYAIVSYQTAYMKAHYPVEFLAASMTLDMSNTEKVNDFRQDAKRLEIEVIPPSVQTSFRH
FETGDNRIYYALAALKGVGESAVDHIVEVRGDTPFASLEDFCLRIDPRQVNRRVLESLIF
AGAFDCFGLDRAQLAGGLDRIMGYAQRAQENKLSGQSDIFGSALSSGPEKISLPPFSPWL
ASEKLLKEFQVLGFYLTAHPLDSYQNILQKMRVQTFAEFSAAVKQGASNGRLAGTVISKQ
ERKTRTGNKMGIIVFSDSSGQFEAVLFSEMLNQYRDVLESGKSFVITAMGEERPEGVGLR
LQTIQSLEEKSLQMQKALRVYVRDSGPLRAVAAHLNAKGDGLVSFIVIKEEGKREVEVEL
PQKYRITPEIAAALRAAPGVVDVELV
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtgcggagaaagacgcggcgagcggttttatcggcggtacgccgggctttgtt
caccttcgtgtccactcggcttattcgctgctcgagggcgcgctgccgcttaagaagatc
ctctacaaggcatcgagcgacagccagccggcgatcgcgatcaccgacaccaacaatctg
tttgtcgccctcgaattctcacagaaggcgatggatgaaggtctgcagccgatcatcggc
tgccaggtctcgatcgacatggaagacggccttgagacggagcggcgcggcggacagcag
gcgctcgtcaagctcccgtccttggtgctgctggccgccaccgacgccgggtacgagcga
ctggtggatctcgtcagtcgggcctatctcggcggtgagggcaacggtcagtcgatccac
attcgtgcctcctggctcgatgagatcggagcggacggcctgatcgccttgacaggtgcc
ttgacggggccgatcgatatggcgttgaaggacgggcacgcagcgcaggcagaagcacgc
ctcctgctgctgaagcgccatttcagcgaccgtctctatgtcgaactgcagcgtcacggc
acctatgacaagcgccatgaacagaaggtcgtgggccttgcctatcagcacgatctgccg
ctggtcgccaccaatgaagcgttcttcccgacccgtgacgactatgatgcgcacgacgcg
ttgatggcggtggcccacaatgccatcgtctctgacgacacgcggttccgcctgacgccg
gatcactacctcaagagccgcgccgaaatggcgaagctgtttgcggatctgccggaagcg
ctggaaaacaccatcgagatagcccgccgctgctcgttcatcctcaagacgcgcaagccg
atcctgccgcgcttcacgggcgccacgaccgatcccgaggaagcggaacgcgaagaggcg
ctcgaactgcgccggcaggcggaggaagggctggacaatcgcctcgccacgctcggcatg
tcgcctggttacgaggagaaggaataccgcgatcggctggagttcgagctcagcgttatc
gaacgcatgaagttccctggctacttcctgatcgttgctgatttcatcaaatgggcaaag
cagcatgatattcccgtcggcccgggccgtggttcgggtgctgggtcgctggtcgcctat
gccctgacgatcaccgacgtcgatccgctgcgtttctcgctgctcttcgaacgcttcctc
aacccggaacgcgtctcgatgcccgacttcgacatcgacttctgccaggatcgccgcgaa
gaggtgatccgctacgtccagcgcaaatacggccgcgagcaggtcgcgcagatcatcacc
ttcggttcgctgcaggctcgcgccgcattgcgagatgtcggccgtgtgctggaaatgccg
tacggacaggtcgacaagatctgcaagctggttcccaacaacccggccaacccgacgccg
ctctcgaaggcgatcgaggaagagccgaagctgcaggaagaggccgacaaggagcctgtc
gtcgcgcgcctgctcgacattgcccaaaagatcgagggcctataccgccacgcctccacc
cacgccgccggtatcgtcatcggcgaccgcccgctgtcgaagctggtgccgatgtatcgc
gatccgcgctccgacatgcccgtcacccagttcaacatgaagtgggtcgagcaggccggc
ctcgtcaagttcgacttcctcgggttgaagacgctgacggtgctgaaggtagcggtcgat
ttcgtcgccaaacgcggcatcaatgtcgacctggcctcgataccgctcgacgacaagaag
acttacgagatgctctcgcggggcgaaacggtcggcgtgttccaggtggaaagtgcgggc
atgcgcaaggcactgatcggcatgaagccggactgcatcgaggatatcatcgcgcttgtg
gcactttatcgcccaggcccgatggagaacatcccgacatacaacgcccgcaaacacggc
gaggaagaagtcgagtcgatccatccgacgatcgactatctgctgaaggagacgcaaggg
gttatcgtctaccaggagcaggtgatgcagatcgcccaggtcctgtccggctactcgctc
ggcgaagccgaccttctgcgccgcgccatgggtaagaagatcaaggcggagatggaccag
cagcgcgagcgcttcgtcgacggtgccgtgaagaacggcgtgtcgaagccgcaggctgac
aacatcttcgaactactcgccaagttcgcgaactacggcttcaacaagtcgcacgccgcc
gcctacgcgatcgtctcctatcagactgcctatatgaaggcgcattatccggtcgagttc
cttgccgcgtcgatgacgctcgatatgtcgaacaccgaaaaggtcaacgacttccgccag
gacgccaagcgcctcgagatcgaggtgatcccgccctcggtgcagacctcgttccgtcat
ttcgagactggcgacaacaggatctactatgcgctggcagcgctgaagggtgtcggcgaa
tcggccgtcgatcatatcgtggaggtccgcggcgacacgccgttcgcaagccttgaagat
ttctgcctgcgcatcgacccgcggcaggtgaaccgtcgcgtgctggaaagcctgatcttc
gccggtgccttcgattgcttcgggctcgatcgcgcgcaactggcaggcggtctcgatcgc
atcatgggttatgcccagcgtgcacaggaaaacaagctgagcggccagtcggatatcttc
ggcagcgctctttcgtcgggccccgagaaaatctcgctgccgccgttttcgccgtggctg
gcctccgagaagctgctcaaggagttccaggtccttggcttctatttgaccgcgcatccg
ctcgatagctaccagaacattctgcagaagatgcgcgtgcagaccttcgccgagttttcg
gcggcagtgaagcagggagcgagcaacggccgccttgcagggacggtcatttccaagcag
gagcgcaagacgaggaccggcaacaagatgggcatcatcgtgttttcggattcatcgggt
cagttcgaagcggtgttgttttctgagatgctgaaccaataccgtgacgtactggagtct
ggaaagtccttcgtgatcacggcgatgggggaggagcggccggaaggcgtcggccttcgg
ctgcagaccatacagtcgctggaagagaaatcgctgcagatgcagaaggccctgcgcgtc
tacgtgcgcgattccgggccactccgcgcggtcgcggcgcacttgaatgcgaagggcgat
ggcttggtctccttcatcgtgatcaaggaggagggcaagcgcgaggtggaggttgaactc
ccgcagaagtatcgcatcacgcccgagattgccgcggcgcttcgcgcagcacccggtgtc
gttgacgtcgagttggtctga
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