Rhizobium favelukesii: LPU83_2422
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Entry
LPU83_2422 CDS
T03046
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A homolog
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhl
Rhizobium favelukesii
Pathway
rhl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPU83_2422 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhl03019
]
LPU83_2422 (deaD)
03009 Ribosome biogenesis [BR:
rhl03009
]
LPU83_2422 (deaD)
Enzymes [BR:
rhl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPU83_2422 (deaD)
Messenger RNA biogenesis [BR:
rhl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPU83_2422 (deaD)
Ribosome biogenesis [BR:
rhl03009
]
Prokaryotic type
rRNA helicases
LPU83_2422 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CDM58078
UniProt:
W6RH64
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All DBs
Position
2361858..2363732
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AA seq
624 aa
AA seq
DB search
MTNFNGVVPAIAKALVKRGYTELTPVQKAMLDPALAASDALVSAQTGSGKTVAFGLALAP
TLLENEDRFGPAAEPLALVIAPTRELALQVKRELEWLYEATGALIVSCVGGMDIRSERRA
LERGSHIVVGTPGRLCDHIRRRALDISALKAVVLDEADEMLDLGFREDLEFILDSSPDGR
RTLMFSATVPAAIAKLAKSYQKNAVRIATAAEEKQHGDIEYRALVVSPSDRENAIINVLR
YYEATNAIVFCSTRAAVNHLTARFHNRNFNVVALSGELTQNERSHALQAMRDGRARVCIA
TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGVSALIVPVNVRRKAERLL
DNAGISAAWARPPSAEEVTARDEARLLADPIFEEAPSEEAQDLVKRLLDAHGAEKLAAAF
VNLYRSNQSAPEDLIEVSVQDSRGGKRREHADGPREPYQKGPRDDFGPSVWFSISVGRKQ
NAEPRWLIPMLCRNGNLTKREIGAIKMQTDETYVEISAESADTFLHAIGQNKTMERGIRV
TALNGTPDFNKPAASKPYAGKKAFGERREFSDDRQKDKFRKEARSEGERDERRDATPWGK
KPGKPKFEGKGSGDPKPKFSKKKG
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgacaaattttaacggcgtcgttccggcgatcgccaaggcgttggtgaagcgcggctat
accgagctgacgccagtccaaaaggccatgctcgacccggcgcttgccgcgtcggacgcc
ctcgtttcggcccagacgggctccggcaagaccgtcgccttcggtctcgcgctggcgccc
acgttgcttgaaaacgaggaccgttttgggcctgcagccgaaccgctcgccctcgtgatc
gcgccgacgcgagagctcgcacttcaggtcaagcgcgaacttgaatggctttacgaagca
acaggcgcgctgattgtcagttgcgtcggcggcatggacatccgcagcgagcgccgtgcg
ctggagcgtggctcccatatcgttgtcggcacaccgggtcgcctctgtgaccatatccgc
cgccgcgcgctcgatatttcggcgcttaaggctgtcgtgcttgatgaagccgatgaaatg
ctcgatctcggattccgcgaagatctcgagttcattttggattcctcgcccgatggtcgt
cggacgctgatgttctcagcgacggttccggcggcgatcgcgaaacttgcgaagagctat
cagaagaacgcggtccgaattgcgacggcagccgaagaaaagcagcacggggacatcgag
tatcgggctcttgtcgtgtcaccaagcgatcgcgaaaacgcgatcatcaatgtcctgcgc
tactatgaagcgaccaacgccatcgtgttctgttcaacgcgcgccgcggttaatcatctg
actgctcgctttcacaaccgcaacttcaacgtcgtcgcgctgtctggcgagctaacgcag
aacgaacgcagccatgcgctgcaggcgatgcgtgatggacgcgcccgcgtttgcatcgcc
acggacgttgcagcccgcgggatcgacctgccgggcctcgacctcgtcatccacgccgac
ctgccgaccaatccggagaccctgcttcatcgcagcggccgaacgggccgggccggccgc
aagggtgtcagcgcactgatcgtaccagtgaacgttcgccgcaaggccgaacgccttctg
gacaatgccggcatctccgccgcctgggcacgtccgccgtcggcggaagaggtcacagca
cgcgacgaagcgcgtctgcttgcagaccccatcttcgaggaagcaccgagcgaggaagct
caggacctggtcaagcggcttctcgatgcacacggggcggaaaagctcgccgccgccttc
gtcaacctttaccgttccaaccaatctgcaccggaggatctaatcgaggtctccgtccag
gacagccgcggcggcaagcgccgcgaacacgccgacgggccacgcgaaccgtatcagaaa
gggccgcgcgatgatttcgggcctagcgtctggttttcgatttccgtcggccggaaacag
aacgcagagccacggtggttgatcccgatgctttgccgaaacggcaatctgacgaagcgg
gagatcggcgcaatcaagatgcagaccgacgaaacctacgtcgagatttccgcggagagc
gccgacaccttcctgcacgcgatcggtcagaacaagacgatggagcgcggcatccgcgtc
accgctttgaacggcacgccagatttcaacaagcccgccgcctcgaagccctatgccggc
aagaaagcctttggcgagcgccgtgaattcagcgacgatcgccagaaggataagttccgt
aaggaagcccgcagcgagggcgaacgggacgagcggcgcgatgcaacaccctggggcaag
aagcccggaaagccgaagttcgagggcaagggcagcggtgacccgaagcccaagttctcg
aagaagaagggatga
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