Rhizobium favelukesii: LPU83_pLPU83d1742
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Entry
LPU83_pLPU83d1742 CDS
T03046
Name
(GenBank) hypothetical protein
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rhl
Rhizobium favelukesii
Pathway
rhl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LPU83_pLPU83d1742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhl03400
]
LPU83_pLPU83d1742
Enzymes [BR:
rhl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LPU83_pLPU83d1742
DNA repair and recombination proteins [BR:
rhl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LPU83_pLPU83d1742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
Viral_helicase1
UvrD_C_2
AAA_22
AAA_11
SLFN-g3_helicase
AAA_16
nSTAND3
UvrD-helicase
AAA_28
PhoH
Herpes_Helicase
SH3_13
AAA_23
PIF1
T2SSE
OB_YrrC
AAA_29
HTH_IclR
NACHT
TsaE
AAA_27
ABC_ATPase
AAA
TrwB_AAD_bind
Peptidase_C15
DUF6440
Motif
LinkDB
All DBs
Position
pLPU83d:complement(1725978..1728263)
Genome browser
AA seq
761 aa
AA seq
DB search
MAGANQRRGGAEGQTFLVLGERSEQSWELSITSVHASRFGDHVIIGRDETEQLRRALVLS
KRSPRDPAVGETWRVTGSIQLHPEHGPQLHAEVALPLVTKGRAIIRHLATDKRFIGIGWA
TAERVWERFGETTYDIIRDRDLKALADVVGADRAIAIVDGFGMLAEEAEIFRWLDRYGVS
PRVAGAAARVWGLGAIDRIKADPFTMTLLEPWKDVDARALRLGVALDDPRRLTAAVEEAL
AIRFRAGNMASPSPVLKHLVKRLLAPWTGDPVSAIDLALASGRVVSPACDLLQSRACRFM
EDEVARQIGVRMGREVPGFDGKLVVDAMAKVEADIGYALTDAQREAVFMATTCGVCVISG
GAGTGKTTVVRAILAALEAMRDHLPASQRHGVEHLQVALAGRAVRRISEATGRPASTLSR
LVHDIEDAGRRVQAGTVIFDESSMLDTPSIYRVLAQLPIEVNLIFIGDPGQLPPIGPGLP
FHTMVKAPGIPSVTLDIVHRQDDATGIPAVASAVRTGKAVGLRRFDPNVALTPGVYLFPA
SKDDVAGKTIAAFRAMCGRVPAYGKTAALHEMDVQILTQVKNGPAGSKELNRAIEVEYMD
RQPNVEDWGLSVGSKIMWLKNDYSKAPLLDAEGKPVVDKMTGDPICAGFMNGSLGVVTKP
HPKGAWVRFDDGAEDAITTADLEKLTHGWAISVHKAQGSAFKRVIIPVVRSKLLDRTMLY
TAITRGIEAVVLVGDIDLINEIIAASPSSLARHTALRFVVE
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atggcaggggccaatcaacgacggggtggcgcagaggggcagacgttcctggtccttggt
gagcgttctgagcagtcctgggagctctccatcacgtcagtccatgccagccggttcggc
gaccatgtcatcatcggtcgcgacgagaccgagcagctccgccgtgccctcgttctttcc
aagagatcgccgcgtgatccggccgttggcgagacgtggcgtgtcacaggctcgatccaa
ctccatccagaacatggtccgcagctccatgccgaggtggcactgcccctcgtcaccaaa
gggcgggcgattatccgccaccttgctaccgacaagcgcttcatcgggatcggctgggcg
acggcagaaagggtctgggagcgcttcggcgagaccacctacgacatcatccgggatcgc
gatctgaaggcgctcgcggacgtcgtcggagcggatcgggccatcgctatcgtcgacggg
ttcggcatgctcgccgaagaggccgaaatcttccgctggctggatcgatacggtgtctct
cctcgcgtggctggtgccgccgcccgtgtctggggtcttggagccatcgaccgcatcaag
gccgatcccttcacgatgacgttgctggagccgtggaaggatgtggatgcgagagcactt
cggctcggtgttgccctggatgatccgaggcgactgacggccgccgtcgaggaggcgttg
gccatccgcttccgggcagggaacatggcctccccttccccggttctgaaacatctggtg
aagcggctgcttgcaccttggactggcgatccggtaagtgccatcgatctggccttggcc
agcggtcgcgtggtttctccagcttgcgaccttctgcaatcaagagcctgtcgattcatg
gaggatgaggtcgctcggcagatcggcgtgcgcatgggccgcgaagttccgggattcgac
ggcaagctggttgtcgatgccatggccaaggtcgaggcggatatcggctacgcccttacc
gatgcgcagcgagaggcggtcttcatggccaccacctgcggcgtctgcgtgatcagcggt
ggcgcgggcacgggcaagacgaccgtcgtccgggcgatccttgccgcgctggaggccatg
cgcgatcatcttccagcttcgcagcgccatggcgtcgaacacctgcaggtggcactggct
gggcgtgccgtcaggcggatcagcgaagccacaggtcgccccgcaagcaccctctcgcgg
ctggtgcacgacatcgaggatgctggccgccgcgtccaagctggcactgtcatcttcgac
gaatcctcgatgctcgataccccgtcgatctaccgggtgctcgcgcagttgcctatcgag
gtcaacctgatcttcatcggtgatcccggccagctcccgcctatcggacccggcctgccc
ttccacaccatggtcaaggcaccgggcattccttcggtcactttggacattgttcacagg
caggacgacgccaccggcattccggccgtcgcatccgccgtgcgcaccgggaaggcggtc
ggcctcaggcgcttcgatccgaatgttgcgctgacacctggcgtctatctcttcccggcg
tcgaaagatgatgtggccggaaagaccatagccgccttccgcgccatgtgcggacgggtt
ccagcctatggcaagacggccgccctgcacgagatggacgtccagatactcacacaggtg
aagaacggcccggccggatcgaaggagctgaaccgtgccatcgaggtcgaatacatggac
aggcagcccaacgtcgaggattggggtctgagcgtcggctcgaagatcatgtggctgaag
aacgattactcgaaggcccctctgctcgacgccgaagggaagcccgttgtcgacaaaatg
acgggcgatccgatctgcgcggggttcatgaacggctccctcggagtcgtcaccaaaccc
catcccaaaggtgcctgggtgcggttcgacgatggcgctgaagacgcgatcaccacggcc
gatcttgagaagctcacccacggctgggcgatcagcgtccataaggcacaagggtcggca
ttcaagcgggtcatcatccccgtcgtccggtcgaagctgctggaccggaccatgctctac
acggccataactcgcggtattgaggccgtcgttctcgtcggagacattgatctcatcaat
gagataatcgcggcgtctccttcgagcctcgccaggcacactgccctaaggtttgtcgtg
gaataa
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