Rhodovulum sp. MB263: B5V46_03325
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Entry
B5V46_03325 CDS
T04771
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rhm
Rhodovulum sp. MB263
Pathway
rhm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B5V46_03325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhm03019
]
B5V46_03325
03016 Transfer RNA biogenesis [BR:
rhm03016
]
B5V46_03325
Enzymes [BR:
rhm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
B5V46_03325
Messenger RNA biogenesis [BR:
rhm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B5V46_03325
Transfer RNA biogenesis [BR:
rhm03016
]
Prokaryotic type
tRNA degradation factors
B5V46_03325
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
MarR_2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ARC87722
LinkDB
All DBs
Position
682459..684714
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AA seq
751 aa
AA seq
DB search
MTRIPAKTEILDWIAAHPGQTSKRDIAKAFGLKGADRIDLKRLLKELEDEGHLEKRKRSY
RDPDRLPPVTVLQILAPNADGDLFARPLEWHGEGAAPKVLYLPRQSDAALGEGDRILAKL
QEVRAEDHQYEARLIRKIGANPKRILGIFRKATEGGRIVPIDKGADKEWTVAASLTHGAK
DGELVEAELAGPRGRMGLPRARIVERLGDPTAPKAVSLIAIHQRGIPDDFPDEVIAEADR
AKPAGLGTREDLRSLPLVTIDPADARDRDDAVLAMPDDDPANPGGYILWVAIADVAHYVT
PGSRLDREARRRGNSSYFPDRVVPMLPDRLSGDLCSLHEGVPRACMAVRMKIDASGHKLS
HRFTRGLMQSAGAFAYEEVQAAEDGTPSERIAPLLEEVIHPLYAAYRALIRAREARQPLD
LDLPERRIELSDEGKVASVKFRDRLDAHRLIEEFMVLANVAAAEELTRLQRPLLFRVHEE
PSPEKLDALREVAGASGFTLAKGQVLHTRQLNDLLDQAMGTEFSELINLSTLRSMTQAYY
FPENFGHFGLALKSYAHFTSPIRRYADLIVHRALISAHGWGRDGLSPEDVDELEATAKHI
SETERRSMAAERDTTDRYLAAYLSERVGNEFGGRISGIARFGAFVSLDETGADGLIPIRE
LGREYFHHDRDAQTLMGADTGLVIGIGQRVTVRLAEAVPVTGGLTFELLSIEDRAVPRGP
GRGRGKPVRRKVARSKAKSDKVRRKVKRTRR
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgacccgcatccccgccaagaccgagatcctcgactggatcgccgcccatcccggccag
acctccaagcgcgacatcgccaaggcgttcgggctgaagggggctgaccgcatcgacctc
aagcgcctgctgaaggagctcgaggacgagggccatctggaaaagcgcaagcgcagctat
cgcgaccccgaccggctgccgccggtgacagtgctgcagatcctcgcgcccaatgccgat
ggcgatctttttgcccggccgctggaatggcatggcgagggtgcggcgccgaaggtgctg
tacctaccccggcaaagcgatgcggcgctgggcgagggcgaccggatcctggccaagctg
caggaggtccgcgccgaggatcaccaatacgaggcgcggctgatccgcaagatcggcgcg
aacccgaaacgcatcctggggatcttccgcaaggccaccgagggcgggcggatcgtccca
atcgacaagggcgccgacaaggaatggacggtcgcggccagcctgacccatggcgcgaag
gatggcgaactggtcgaggccgaactggcggggccgcgcggccggatggggctgcccagg
gcccgcatcgtcgagcggctgggcgatccgaccgcgccgaaggcggtcagcctgatcgcc
attcatcagcgcggcatccccgacgacttccccgacgaggtgatcgccgaggccgaccgc
gccaagcccgccgggctgggcacccgcgaggatctgcgttcgctgcctctggtcaccatc
gacccggcggatgcgcgcgaccgcgacgatgcggtgctggcgatgcccgatgacgatccg
gcgaatccgggcgggtatatcctctgggtcgccatcgccgatgtggcccattacgtgacc
ccgggctcgcggctcgaccgcgaggcgcggcggcggggcaattcctcttacttccccgac
cgggtcgtgccgatgctgcccgaccggctgtcgggcgatctgtgttcgctgcatgagggc
gtgccgcgcgcctgcatggcggtccggatgaagatcgacgcctcgggccacaagctgtcg
caccggttcacccgcgggctgatgcaatcggccggtgccttcgcctatgaggaggtgcag
gcggccgaggatggcacgccctcggagcgcatcgcgcccttgctcgaggaggtgatccac
ccgctttacgccgcctatcgcgcgctgatccgggcccgcgaggcgcgccagccgctggat
ctagacctgcccgagcgccggatcgaactgtccgacgagggcaaggtggcctcggtgaag
ttccgcgaccggctggatgcgcaccggctgatcgaggaattcatggtgctggccaatgtc
gccgccgccgaggaactcacccggctgcaacgcccgcttctgttccgggtccatgaagag
ccgagccccgaaaagctcgatgcgctgcgcgaggtggcgggcgcctcgggcttcacgctg
gccaaggggcaggtgctgcatacccgccagctgaacgacctgctcgatcaggcgatgggg
accgagttttccgagctgatcaacctctcgacgctgcgctcgatgacccaggcctattac
ttccccgagaatttcggccatttcggtctggcgctgaaatcctatgcccatttcacctcg
ccgatccggcgctatgccgatctgatcgtgcaccgggcgctgatctcggcgcatggctgg
ggccgggacgggctcagccccgaggatgtcgacgagctcgaggccactgccaagcatatc
agcgagaccgagcggcgctcgatggcggccgaacgcgacaccaccgatcgctatctcgcc
gcctatctctccgagcgggtgggcaacgaattcggcggccggatctcggggatcgcgcgg
ttcggcgccttcgtctcgcttgacgagacaggggcggacgggcttatcccgatccgcgag
ctgggccgggaatatttccaccacgaccgcgatgcccagaccctgatgggcgccgatacc
gggctggtgatcggtatcggccagcgggtgacggtgcgcctcgccgaggcggtgccggtg
accgggggcctgaccttcgagcttctgtcgatcgaggaccgggcggtgccgcgcgggccc
gggcgcggccggggcaagccggtgcggcgcaaggtggcgcggtccaaggcgaaatcggac
aaggtcaggcgcaaggtcaagcggacgcggcgctga
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