Rhodovulum sp. MB263: B5V46_03395
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Entry
B5V46_03395 CDS
T04771
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rhm
Rhodovulum sp. MB263
Pathway
rhm03030
DNA replication
rhm03430
Mismatch repair
rhm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B5V46_03395
03430 Mismatch repair
B5V46_03395
03440 Homologous recombination
B5V46_03395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhm03032
]
B5V46_03395
03400 DNA repair and recombination proteins [BR:
rhm03400
]
B5V46_03395
Enzymes [BR:
rhm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
B5V46_03395
DNA replication proteins [BR:
rhm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
B5V46_03395
DNA repair and recombination proteins [BR:
rhm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
B5V46_03395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
Scaffold
Motif
Other DBs
NCBI-ProteinID:
ARC87735
LinkDB
All DBs
Position
699817..703320
Genome browser
AA seq
1167 aa
AA seq
DB search
MSAPRFIHLRVHTEYSLLEGAVRVKKLPGLCAAAGMPAVAVTDTNNMFCALEFSVMATGA
GIQPIIGCQVDLSYDPAAPGEAPRAPAPVVLLAQNETGYGNLMKLNSCLYLDTGGQLPQV
TLDELADHADGVICLSGGPDGPVGRLLRAGQRPKAEALLTRLAAAFPTRLYVELQRHPGE
GGQPTEAERETERGHVEMAYAMDLPLVATNDVYFPKSDMYEAHDALLCIADGAYVDQAQP
RRRLTPQHYFKTPEEMAALFADLPEALENTVEIARRCAVKSEKRKPILPRFADDEVEELR
RQAWEGLEARLAVIPHAAPVEDYEKRLQFELDIIEGMGFPGYFLIVSDFIKWAKEHGIPV
GPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIHYV
QQKYGREKVAQIITFGALLSKAAVRDVGRVLQMPYGQVDKLSKLIPVEGVKPVSIAQALT
DEPRLREAAKNEEVVDRLLTYGQQVEGLLRNASTHAAGVVIGDRPLDELVALYQDPRSDM
PATQFNMKWVEQAGLVKFDFLGLKTLTVIRNAVDLIHRGGRSLHQAADGTVLYQPPPGAE
EDIGHIPLDDEKTYQLYSSARTVAVFQVESSGMMDALRRMKPTCIEDIVALVALYRPGPM
ENIPTYCEVKQGLRPLESVHPTIDHILAETQGIIVYQEQVMQIAQVMAGYSLGGADLLRR
AMGKKIKEAMDAERPKFVDGAKKNGVDAKKATEVFDLLEKFANYGFNKSHAAAYAVVSYQ
TAWLKANHPVEFMAGIMNCDIHLTDKLAVYAEEVRRGLDLEIVPPCVNRSLATFDVQDGA
LVYALGALKNVGIEAMKMIVAAREDRPFASLFDFARRVDMKHVGKRPLEMLARAGAFDTL
DGNRRRVFESLDALVGYSAAIHDQRASAQVSLFGEAGEDLPEPRLAQTPDWLPNERLAEE
QKAIGFYLSGHPLDDYMPALRRKKVMTKAEVEEKTKAGPALVQMAGAVAARQERKSAKGN
RFAFVQMSDPTGLFEVTLFSDVLEVARDQLEPGMNVVIQVEANLENEQLKLLGRSVKPID
KVVAEAGVTGLKVVLETEAAVEAVAALLDRARGESGARGGRGPIEFSLLAPDLPGEVRMT
LNDRYPVNPQIKGALRSLPGVAMVEEV
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcgccccgattcatccatctccgagttcataccgaatattcgctgctcgagggc
gcggttcgggtcaagaaactgcccggtctctgcgcggcggcgggcatgcctgccgttgcc
gtcaccgataccaacaacatgttctgtgcgctggaattctcggtgatggcgaccggcgcg
gggatccagccgatcatcggctgccaggtcgatctcagctatgatccggcggcgcctggc
gaagccccgcgcgcgcccgcgccggtcgtgctcctggcccagaacgagaccggctacggc
aatctgatgaagctgaactcgtgtctctatctcgatacgggcgggcagttgccgcaggtg
acgctcgacgagcttgcggaccatgcggacggggtgatctgcctcagtggcggcccggac
ggtccggtggggcggctgttgcgggccgggcagcgcccgaaggccgaggcactgttgacc
cggctggcggcggcctttccgacccggctttatgtcgagcttcagcgccatccgggcgag
ggcgggcagccgaccgaggccgagcgcgagaccgagcgcggccatgtcgagatggcctat
gccatggacctgccgttggtcgcgaccaatgacgtctatttccccaaatccgacatgtac
gaggcccatgacgcgcttctgtgcatcgccgacggggcttatgtggaccaggcccagccg
cgccgccggctgacgccgcagcattatttcaagactcccgaagagatggcggcgctgttc
gccgatcttcccgaggcgttggaaaataccgtcgagatcgcgcggcgctgcgcggtcaag
tcggaaaagcgcaagccgatcctgccgcgcttcgccgatgacgaggtcgaggagctgcgc
cgccaggcctgggaggggctcgaggcccggctggccgtcatcccgcatgccgcgccggtc
gaggattacgagaaacggctgcagttcgagctggacatcatcgagggaatggggttcccg
ggctacttcctgatcgtgtccgacttcatcaaatgggccaaggaacatggcattccggtg
gggccggggcggggctcgggcgcgggctcgctggtggcctatgcgctgaccatcaccgat
ctcgatcccttgcgctattcgctgctgttcgaacgcttcctgaatcccgaacgggtctcg
atgcccgacttcgacatcgacttctgcatggatcgccgcgaggaggtgatccattacgtg
cagcagaaatacggccgcgagaaggtggcccagatcatcaccttcggcgcgctcctgtcc
aaggccgcggtgcgcgacgtgggccgggtgctgcagatgccctatggccaggtcgacaag
ctgtcgaagctgatcccggtcgaaggggtcaagccggtctcgattgcccaggccctgacc
gacgagccccgcctgcgcgaggccgcgaagaacgaggaagtcgtcgacaggctgctgacc
tatggccagcaggtcgaggggctcttgcgcaacgcctcgacccacgccgcgggcgtggtg
atcggcgaccggccgctcgatgagctggtggcgctgtaccaggacccgcgctcggacatg
cccgcgacccagttcaacatgaaatgggtcgagcaggccggtctggtgaagttcgacttc
ctcgggctgaagacgctgacggtgatccgcaatgcggtcgacctgatccatcgcggcgga
cggtcgctgcatcaggcggccgacggcacggtgctgtaccagccgccgcccggggccgag
gaggatatcgggcatatcccgctggatgacgagaagacctaccagctttactcctcggcg
cgcacggtcgcggtgttccaggtggaaagctcggggatgatggatgcgctgaggcgcatg
aagcccacctgcatcgaggacatcgtcgctctggtggcgctttaccgtcccggtccgatg
gagaacatccccacctattgcgaggtcaagcaggggctgagaccgctcgaatcggtgcac
ccgaccatcgaccacatcctggccgagacccagggcatcatcgtctatcaggaacaggtg
atgcagatcgcccaggtgatggcgggctacagtctgggcggcgccgacctgctgcgccgc
gccatgggcaagaagatcaaggaggcgatggacgcggagcgtccgaaattcgtggacggc
gccaagaagaacggcgtcgatgcgaaaaaggcgaccgaggtcttcgaccttctcgagaaa
ttcgcgaattacggcttcaacaagtcccacgccgctgcctatgcggtggtcagctaccag
accgcctggctgaaggcgaaccatccggtcgagttcatggctggcatcatgaactgcgat
atccacctgaccgacaagctggcggtctatgccgaggaggttcggcgcgggctcgatctg
gaaatcgtgccgccttgcgtgaaccgttcgctcgcgaccttcgacgttcaggacggagca
ctggtctacgcgctgggcgcgctcaagaacgtcgggatcgaggcgatgaagatgatcgtc
gcggcgcgcgaggaccggcccttcgcctcgctcttcgatttcgcccggcgcgtcgacatg
aagcatgtcggcaagcggccgctggaaatgctggcccgcgccggggccttcgatacgctc
gatggcaaccgccgccgggtcttcgaaagcctcgacgcgctggtgggctattcggccgcg
atccacgatcagcgcgcctcggcgcaggtctcgctgttcggcgaggcgggcgaggatctg
cccgagccgcgtctggcgcagaccccggactggctaccgaacgaacgcctggcagaggaa
cagaaggccatcggcttctacctgtcggggcatccgctcgacgattacatgcccgcgctc
aggcgcaagaaggtgatgaccaaggccgaggtcgaggaaaagaccaaggcgggaccggcc
ctcgtccagatggcgggcgccgttgccgcgcggcaggagaggaagtccgcaaagggcaat
cgtttcgccttcgtgcagatgtcggacccgacggggctgttcgaggtgacgctgttctcg
gacgtgctcgaggttgcgcgcgatcagctggagccgggcatgaatgtggtgatccaggtc
gaggccaatctggagaacgagcaactgaagcttctgggccggtcggtgaagccgatcgat
aaagtcgtggccgaagccggggtgaccgggctcaaggtggtgctcgagaccgaggctgcg
gtcgaggcggtcgcggcgctgctcgaccgggcacggggcgaaagcggggcgcgcggcggt
cgcggcccgatcgaattcagcctgcttgcccccgacctgcccggcgaggtccggatgacg
ctgaacgaccgctacccggtcaatcctcagatcaagggcgcgctgcgcagcctgcccggt
gtcgccatggtcgaagaggtctga
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