Rhodovulum sp. MB263: B5V46_07105
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Entry
B5V46_07105 CDS
T04771
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhm
Rhodovulum sp. MB263
Pathway
rhm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B5V46_07105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhm03019
]
B5V46_07105
03009 Ribosome biogenesis [BR:
rhm03009
]
B5V46_07105
Enzymes [BR:
rhm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B5V46_07105
Messenger RNA biogenesis [BR:
rhm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B5V46_07105
Ribosome biogenesis [BR:
rhm03009
]
Prokaryotic type
rRNA processing factors
B5V46_07105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ARC88398
LinkDB
All DBs
Position
1489690..1492602
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AA seq
970 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVDEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALLAEERALAEEMEDDEGESDKPKRRSRSRRKP
RADKPASAAPETASGEDGAGEDGTESDAGEAEDREQDAAAAADVPAAEDESRPAEAAAEA
EAEDAGPAGDSEEDEDGKDNDPPPSVMAMAAHSDDPVESREPSGGIPGMDVVDLGDDEDG
EEPVEAEDTAETRKSSSRRRRRSPRRKTDEADDAPASVSDEAEEDGPEEVHHDDQIESVA
EEDVHEEIRPRKPRARRYKIQEVVKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLM
PNTARGGGISRKITNAVDRKKLKEIASELDVPEGAGLIIRTAGAKRTKSEIRRDYEYLQR
LWEQIRELTLKSVAPAPIYEEGNLIKRSIRDLYSREIDEVLVEGEGGYRLAKDFMKMIMP
SHAKNVKNYTDPMPLFARYQVESYLSSMFNPVVQLKSGGYLVIGVTEALVAIDVNSGRAT
KEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAVEKRIKDKLKTD
RARIQVGRISGFGLLEMSRQRLRPGMIEATTQPCPHCHGTGLIRSDDNLALSILRQIEEE
GVRGRSREVLLKAPIGIVNFLMNQKREHVAQIEARYGLSVRIEADPFLISPDFSIERFKT
ATRAVPEVVTPVVSLDMSDMPDPVEEEDEHEEETPVVAAAPVPAPEGEDKPGKKRRRRRR
KKKTPQGGEDQGVEAGQDESDDADSDGDTDAEAPEAVTAEAANEAASAEEKPAEEKPRRS
RRSRSRGRKTERPEAGAEARAEEAVAPKAEEPAAVEAQVPAEAASPVEAPVVEEAAVEEA
EASPETVELPEAELAAEAPVAEAAVEAEEKAAPEAEPTLRPETQPEPEPKTAEASKDSVP
KRQGWWSVGR
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaagatgctcatcgacgccacccacgcggaggaaacccgcgtggtcgtggtg
gacggaaacaaggttgacgagttcgatttcgagaccgtcaacaaacgccagcttgctggc
aatatctacctagcaaaggtcacgcgggtcgagccgtccttgcaggcggccttcgtcgat
tatggcggcaaccgccatggtttcctcgccttctcggaaatccatcccgactattaccag
atcccggtcgccgaccgcgaggcgcttctggccgaggagcgtgccctggccgaagagatg
gaggacgatgagggcgaaagcgacaagcccaagcgtcgcagccgctcgcgccggaagccg
cgcgcggacaagcccgcttctgccgcgccggagactgcgtccggggaagacggggccggg
gaagacgggaccgagagtgacgccggagaggcggaggaccgcgaacaggatgccgcggcc
gccgctgacgttccggccgcggaagacgagagccggccggccgaagctgctgcggaagcc
gaggccgaggatgccggccccgccggcgattccgaggaggatgaggacgggaaggacaac
gacccgccgccctcggtcatggccatggccgcgcatagcgacgatccggtcgagagccgc
gagccgagcggtggcattcccggcatggatgtcgtcgacctgggcgatgacgaggacggc
gaggagccggtcgaggcggaggacaccgccgagacccgcaagtcctcctcgcgccgccgc
cgtcgcagcccgcgcaggaagaccgacgaggccgatgacgccccggcgtccgtctctgat
gaggccgaggaagacggccccgaagaggtccaccatgacgaccagatcgagtcggtcgcc
gaggaggacgtgcatgaagagatccgcccgcgcaaaccgcgtgcgcgtcgttacaagatc
caggaagtggtcaaggtccggcagatcatgctggtccaggtcgtcaaggaagagcgcggc
aacaagggcgcggcgctcaccacctatctttcgctggccgggcgctactgcgtgctcatg
cccaatacggcgcgcggcggcggtatcagccgcaagatcaccaatgcggtcgaccgcaag
aagctgaaggaaatcgcctccgagctcgacgtgccggaaggcgcgggcctgatcatccgg
accgcgggcgccaagcgcaccaagtccgagatccggcgcgactacgaatatctgcaacgg
ctctgggaacagatccgcgaactgacgctgaaatccgtcgcgcccgccccgatctacgag
gaaggcaatctgatcaagcgctcgatccgcgacctctacagccgcgagatcgacgaggtt
ctggtggaaggcgagggcggttaccgcctggccaaggacttcatgaagatgatcatgccg
tcccatgccaagaacgtgaagaattacaccgatccgatgccgcttttcgcgcgctatcag
gtcgagagctatctcagctcgatgttcaatccggtggtgcagttgaaatccggcggctac
ctggtgatcggcgtgaccgaggcgctggtggcgatcgacgtgaactctggccgggccacc
aaggaaggctcgatcgaggaaaccgcgctgaagaccaacctcgaagccgccgaggaggtg
gcgcgccagctgcgtctgcgcgacctcgcgggtctgatcgtgatcgacttcatcgacatg
gaagagcgcaagaacaacgctgccgtcgagaagcgcatcaaggacaagctcaagaccgac
cgcgcccggatccaggtcggccggatctcgggcttcggtctcctggagatgtcgcgccag
cgtctgcgcccgggcatgatcgaggccacgacccagccctgtccgcattgccacggcacc
gggctgatccgctcggatgacaatctggcgctgtcgatcctgcgccagatcgaggaagag
ggggtgcgcggccgctcgcgcgaggtgctcttgaaggcgcccatcggcatcgtcaacttc
ctgatgaaccagaagcgcgagcatgtggcccagatcgaggcccgctatggcctgtccgtc
cggatcgaggccgatcccttcctgatctcgccagatttctcgatcgagcgcttcaagacc
gccacccgtgcggtgcccgaggtcgtgaccccggtggtctctctcgacatgtcggacatg
cccgacccggtcgaggaggaggacgagcacgaggaagagacgccggttgtcgccgcggcc
cccgtgcccgcgcccgagggcgaggacaagcctggcaagaagcgccgtcgccgccgccgg
aagaagaaaaccccgcagggcggtgaggatcagggcgtcgaggccggtcaggacgagtcc
gacgacgcggatagcgatggcgataccgacgcggaggcgcccgaggcggtgacggcagag
gccgccaacgaggccgcttctgctgaagaaaagcccgcggaagagaaaccccggcgctcg
cgccgcagccggtcgcgcggtcgcaagaccgagcgtcccgaagccggggccgaagctcgg
gccgaggaggctgtcgcgccgaaagccgaggaacctgcagcggtcgaagcccaggttcct
gcagaggcggcgtccccggtagaggcccccgtggtcgaagaagccgctgtggaagaagcc
gaggcctcgcccgaaacggtcgaactgcccgaagccgaactggccgcggaggcgccggtc
gccgaggctgctgtcgaggccgaggaaaaggcggcccccgaggcggagcccacgctgagg
cctgaaacgcagcctgaaccggagcccaaaaccgccgaggcgtcgaaagacagcgtgccc
aagcggcaggggtggtggtcggtcggccgctga
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