KEGG   Rhodococcus sp. M8: ISO16_03045
Entry
ISO16_03045       CDS       T11421                                 
Name
(GenBank) Ku protein
  KO
K10979  DNA end-binding protein Ku
Organism
rhmm  Rhodococcus sp. M8
Pathway
rhmm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rhmm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ISO16_03045
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rhmm03400]
    ISO16_03045
DNA repair and recombination proteins [BR:rhmm03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ISO16_03045
SSDB
Motif
Pfam: Ku HC2 Extensin_1 SIMR_N
Other DBs
NCBI-ProteinID: QPG46074
LinkDB
Position
complement(657994..658971)
AA seq 325 aa
MRSIWKGSIAFGLVNVPVKVYSATESHDIRFHQVHAKDGGRIKYDRICTECGESVPYAEI
DKAYDSDEGVRVVLADEDFDKLPVAEKHEIPVLQFVPTEQIDPILFEKSYYLEPDSSSPK
AYTLLAETLTQTDRTALVHFTLRQRTRLAALRNRDGVLVLQTLLWPDEVRSVAFPVLDDA
EPPKQKELAMAEMLVESMADDFRPDEFTDEYQVELRSLIDDIIARGGEKVLPVTPAGEPA
AEDAEVLDLVAALQRSVDAAAAGDEPGAAAPARGAAAKKTPARKSAAKKTPAKKTTAEKP
TAKKTAAKKTTEKAPAKKSTARKRA
NT seq 978 nt   +upstreamnt  +downstreamnt
atgcgttcgatctggaagggttccatcgcgttcgggctggtgaacgtgccggtgaaggtg
tattcggccacggagagccacgacatccggttccaccaggtgcatgcgaaggacggcggg
cggatcaagtacgaccggatctgcaccgagtgcggcgagtcggtgccctacgccgagatc
gacaaggcctacgactccgacgagggcgtgcgggtggtgctcgccgacgaggacttcgac
aagctgcccgtcgcggagaaacacgagatcccggtgctgcagttcgtcccgaccgagcag
atcgacccgatcctgttcgagaagtcgtactacctcgagccggactcgtcgtcgccgaag
gcgtacacgctgctggccgagacgctcacgcagaccgatcgcaccgcactggtgcacttc
acgctgcggcagcgcacccggctggcggcgctgcgcaaccgcgacggcgtgctcgtgctg
cagaccctgctgtggccggacgaggtgcggtcggtggcgttcccggtgctcgacgacgcg
gagccgccgaagcagaaggaactggcgatggcggagatgctcgtcgagtcgatggccgac
gacttccgtccggacgagttcaccgacgagtaccaggtcgagctgcggtcgctgatcgac
gacatcatcgcccggggcggcgagaaggtgctgccggtgaccccggcgggggaacccgcc
gccgaggacgccgaggtgctggacctggtggctgcgctgcagcgcagcgtggacgccgcc
gcggccggcgacgagccgggcgcggccgcgcccgcccggggcgcggcggcgaagaagacg
cccgccaggaagagcgccgcgaagaagacgccggcgaagaagaccacggccgagaagccc
accgcgaagaagacggcggcgaagaagaccaccgagaaggcccccgcgaagaagtccacc
gcgcgcaagcgggcctga

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