Rhodococcus sp. M8: ISO16_13315
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Entry
ISO16_13315 CDS
T11421
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rhmm Rhodococcus sp. M8
Brite
KEGG Orthology (KO) [BR:
rhmm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rhmm03016
]
ISO16_13315
Enzymes [BR:
rhmm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ISO16_13315
Transfer RNA biogenesis [BR:
rhmm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ISO16_13315
Prokaryotic type
tRNA splicing ligases
ISO16_13315
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Ortholog
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GFIT
Other DBs
NCBI-ProteinID:
QPG47872
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Position
complement(2973536..2974957)
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AA seq
473 aa
AA seq
DB search
MRIVEETPYRFRIDRAGAMRVPGIVFATRSLLPVAEGDEALTQVANVATLPGIVTASFAM
PDVHWGYGFPIGGVAATDIDDGGVVSPGGVGFDISCGVRLLIARDADRSALASRLGVLMD
RLGRVVPRGMETRGVWELPDRTVLRQVLAGGARFAVEQGHGVARDLERCEDRGVLDGADP
DAVSDRAVERGLGQLGSLGSGNHFLEVQAVERVFDPDTARLMGLDVGTVCVMIHCGSRGL
GHQICTDHVREMGKAMGRYGIHVPDRQLACVPVRSPEGEAYLGAMVAAANYGRANRQLLT
EAARRVFEETAGTTLDLLYDISHNLAKIERHEVGGRVRALCVHRKGATRSLPPDHPDVPA
DLTDAGQPVLIPGTMGTASYVLAGVAGNPAFYSTAHGAGRVQSRHRAARHTDGRAVRDAL
ETHGVLVRGSSWRGLAEEKPEAYKDIDAVAEVSERAGLARRIARLVPLGVVKG
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaggatcgtcgaggagaccccgtaccggttccggatcgatcgggccggcgcgatgcgc
gtacccgggatcgtcttcgccacccggtccctgctccccgtcgcggagggggacgaggcg
ctcacccaggtcgccaacgtcgcgacgctgcccggcatcgtcaccgcgtcgttcgccatg
ccggacgtgcactggggttacggctttcccatcggcggggtcgcggcgacggacatcgac
gacggcggcgtcgtctcccccggcggcgtgggcttcgacatctcgtgcggcgtacggctc
ctgatcgcacgcgacgcggaccggtccgccctcgcgtcgcgcctgggtgtgttgatggac
cggctcggtcgcgtcgtaccgcgcggcatggagacccggggcgtgtgggaactcccggac
cgtaccgtgctgcggcaggtgctcgcgggcggcgcccgcttcgcggtggagcaggggcac
ggcgtcgcccgcgacctcgagcggtgtgaggaccgtggcgtgttggacggcgccgacccg
gacgcggtgagcgaccgtgccgtggagcggggcctcggtcagctcggcagcctcgggtcg
ggaaaccacttcctcgaggtccaggccgtcgagcgggtcttcgatccggacaccgcgcgg
ctgatggggctcgacgtgggcacggtgtgcgtgatgatccactgcggatcccgcggcctg
ggccaccagatttgcaccgaccatgtacgtgagatgggtaaggcaatgggccgctacggg
attcacgtccccgaccggcagctggcgtgcgttccggtccggtcgccggagggggaggcc
tatctcggggccatggtggcggcggccaactacggccgggccaaccggcagttgctcacc
gaggcggcccgccgggtcttcgaggaaacggccggcacgaccctcgacctcctctacgac
atctcgcacaacctggcgaagatcgagcggcacgaggtcggcggccgggtccgcgcgctg
tgcgtgcaccgcaagggcgcgacgcggtccctgccgccggaccaccccgacgtgcccgcc
gacctcaccgatgcagggcagcccgtgctcatccccggcacgatgggcaccgcgtcgtac
gtgctggccggtgtcgccgggaacccggcgttctactccaccgcgcacggggccggtcgg
gtgcagagccggcaccgtgctgcccggcacaccgacggccgggcggtgcgcgacgcactc
gagacgcacggggtgctcgtgcggggaagctcgtggcggggactcgccgaggagaagccg
gaggcgtacaaggacatcgacgcggtggcggaggtgagcgaacgtgcgggcctggcccgc
cggatcgcccggctcgtgccgctcggcgtcgtcaaggggtga
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