Rhodococcus sp. M8: ISO16_25480
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Entry
ISO16_25480 CDS
T11421
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rhmm Rhodococcus sp. M8
Pathway
rhmm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhmm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ISO16_25480 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhmm03400
]
ISO16_25480 (recD)
Enzymes [BR:
rhmm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ISO16_25480 (recD)
DNA repair and recombination proteins [BR:
rhmm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ISO16_25480 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
AAA_11
Viral_helicase1
NAT10_TcmA_helicase
UvrD-helicase
AAA_22
SH3_13
TraI_hel_assoc_N
Mg_chelatase
AAA_24
Motif
Other DBs
NCBI-ProteinID:
QPG45133
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All DBs
Position
5586957..5588840
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AA seq
627 aa
AA seq
DB search
MTKAQVAQRGKGALRVFNEAGVLAAADVHVALRLAQLSGETAEDVHLATALAVRAVRAGS
VCLDLTRLREVTVDEAAEVDLAALPWPDDDAVVAGLRRSPLVVGGDRGPLRPLRLVDTAD
GPLLYLERYFRQEETVRQILDARGLGHPVVDEQTLERGLRELFRDQHDPGRPAAAPDRQR
IAAALAATGWTTVIAGGPGTGKTHTVARILALLTTLHGPALRIGLAAPTGKAAARLQESV
REQAEPLGLRADLSAMTLHRMLGWQRGRTRYRYHAGNHLPYDVVVVDETSMVSLTMMCRL
LEAVRPGTRLILVGDPDQLTSVDAGAVLADLVARPVTAAGNPVLGRVVGPDLDAGDDPAE
AALSPGERNRLRGGVIRLSRGRRFGGDIAHLAVAVREGDADAVMRILGGGGTEVSFHAPN
DLEALRHDVVTTAATVTAAAVAGDAVTALEQFETHRLLCAHREGPYGVQWWARRAMEWIA
TDTGRRLDAERWYPGQPLLVTANDHETRIYNGDTGVVVVDAAGEPVAAFARGREPFRLHP
SQLSAVQTVYAMTIHRSQGSQYGTVSVILPPPESSLLTRELLYTAITRARGHVRLIGTEE
AARAGVERRVLRASGLRRQLPGPRAVR
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
gtgacgaaggcccaggtggcccagcgtggcaagggggccctgcgggtcttcaacgaggcc
ggggtgctcgcggccgccgacgtgcacgtcgcgctgcggctggcccagctgtccggggag
accgccgaggacgtgcacctcgcgaccgcgctggccgtgcgtgccgtgcgtgccggttcg
gtgtgcctggacctgacccggttgcgggaggtcaccgtcgacgaggccgcagaggtggat
ctcgcggcgctgccgtggccggacgacgacgccgtcgtcgccgggttgcgccgcagtccg
ctcgtcgtcggcggcgaccgcggcccgctgcgcccgctgcgcctggtggacaccgccgac
ggtccgctgctgtacctcgagcgctacttccgtcaggaggagacggtccggcagatcctc
gacgcccgcgggctcggtcatcccgtcgtcgacgagcagacgctcgagcgggggctgcgg
gagctgttccgggaccagcacgaccccggccgcccggccgccgcaccggatcggcagcgc
atcgccgcggcgctggccgccaccgggtggaccacggtcatcgccggcgggccgggcacc
ggcaagacccacaccgtcgcccggatcctggcgctcctgaccacgctgcacggccccgcc
ctgcgcatcggattggccgcgcccaccggcaaggccgcggcccggctgcaggaatccgtc
cgcgagcaggccgagccgctgggcctgcgcgccgacctgtccgcgatgaccctgcaccgc
atgctcggctggcagcgcggccgcacccggtatcgctaccacgccggcaaccatctgccc
tacgacgtcgtggtcgtcgacgagacgtcgatggtgtcgctgaccatgatgtgccggctg
ctcgaggccgtccgccccggcacccgcctgatcctggtgggcgaccccgaccagctgacc
tccgtcgacgccggcgccgtcctggccgacctcgtggcccgtcccgtcaccgccgcggga
aaccccgttctcggccgcgtcgtgggacccgacctcgacgccggcgacgaccccgccgag
gcggcgctctcgccgggggaacggaaccggctgcgcggcggcgtgatccggctcagccgc
ggccggcggttcggtggcgacatcgcacacctggccgtcgccgtgcgggagggcgacgcc
gacgcggtgatgcggattctcgggggcggtggcaccgaggtgtccttccacgcgccgaac
gacctggaggccctgcggcacgacgtcgtcaccaccgccgcgaccgtcaccgccgccgcc
gtcgcgggcgacgccgtgactgcgctcgagcagttcgagacgcaccgcctgctgtgcgcg
caccgcgagggaccgtacggggtgcagtggtgggcgcggcgggcgatggagtggatcgcc
accgacaccggccggcgactcgacgccgagcgctggtacccgggtcagccgctgctcgtc
accgccaacgaccacgagacccgcatctacaacggcgacaccggcgtcgtggtcgtcgac
gccgccggcgaacccgtcgcggcgttcgcgcgtggcagggagccgttccggctccacccg
agccagctgtcggccgtgcagaccgtgtacgcgatgaccatccaccgcagccagggcagc
cagtacggcacggtctcggtgatcctgcccccacccgaatcctcgctgctgacccgcgaa
ttgctgtacaccgcgatcacccgggcgcgcggtcacgtgcgcctgatcggcaccgaggaa
gccgcccgcgccggggtcgagcggcgggtgctgcgagccagcggcctgcgccggcagctg
ccgggccctcgggccgtccggtga
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