Rhodococcus sp. M8: ISO16_27670
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Entry
ISO16_27670 CDS
T11421
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rhmm Rhodococcus sp. M8
Pathway
rhmm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhmm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ISO16_27670 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhmm03021
]
ISO16_27670 (rho)
03019 Messenger RNA biogenesis [BR:
rhmm03019
]
ISO16_27670 (rho)
Transcription machinery [BR:
rhmm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ISO16_27670 (rho)
Messenger RNA biogenesis [BR:
rhmm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ISO16_27670 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
NACHT
VWA_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QPG45525
LinkDB
All DBs
Position
6088688..6090673
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AA seq
661 aa
AA seq
DB search
MTDTDLIATPVLDTTDSSAGAQATDPAQTAPRAGGRRGAGLSGMVLAELRTLAAELGIKG
TSGMRKGDLIAAIKERQGGGAAETAPAPEQPARPVRARRARGAAQDAAPADTAAPAAEPA
QARPAATTAPEQPAEAAEQPADGEAEGGRRGRQRRGRRGGDQAAETTTAEAPKDAAEART
DEKPRAEEKAEEKAEPSDGGRRERGQRDGQRDQRDGQRDQGERRREDRGQGPRQDGRDGR
GGEDDEDGRGRRGRRFRERRRGRDRGEAGGDTREPEIREDDVLQPVAGILDVLDNYAFVR
TSGYLAGPNDVYVSMNMVRKNGLRRGDAITGAVRVPREGEQGNQRQKFNPLVRLDTVNGG
DVEAAKRRPEFNKLTPLYPNQRLRLETTPNILTTRVIDLIMPIGKGQRALIVSPPKAGKT
TVMQDIANAITTNNPECYLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAEL
AIERAKRLVEQGRDVVVLLDSITRLGRAYNNSSPASGRILSGGVDSTALYPPKRFLGAAR
NIENGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGT
RKDELLMSPDEFAVVHKLRRVLSGLDSHQAIDLLIDRLKKSKSNIEFLLQVSKTAPGALD
D
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
gtgacagatacggacctgatcgctacgcctgttctcgataccacggattcgtccgcggga
gcgcaggccaccgatcctgcacagactgcaccgcgtgccggtgggcggcgtggcgccggt
ctctccggcatggtgctggccgagctgcggactctcgcggccgaactcggcatcaaggga
acctccgggatgcgcaagggcgatctcatcgccgcgatcaaggagcgtcagggcggcgga
gccgccgagacggctcctgcgccggaacagccggcccggcccgtccgggctcgtcgcgcc
cgtggtgccgcccaggacgcggccccggccgacaccgccgcccccgccgccgagccggcc
caggcgcggcccgccgcgacgacggcgcccgagcagcccgccgaggcggcggagcagccc
gccgacggggaggccgagggtggccgccggggtcgtcagcgtcgcggtcgccgaggtggc
gaccaggccgccgagacgaccaccgccgaggccccgaaggacgccgccgaggcgcggacc
gacgagaagccgcgcgccgaggagaaggccgaggagaaggccgagccgtccgacggcggt
cggcgcgagcgcggtcagcgcgacggccagcgcgaccagcgcgacggccagcgcgaccag
ggggaacgccgccgcgaggaccgtggtcagggcccccgtcaggacggccgcgacggccgg
ggtggcgaggacgacgaggacggccgcgggcgccgcgggcgccgcttccgtgagcgtcgt
cgcggacgtgaccgcggcgaggccggcggtgacacacgcgagcccgagatccgcgaggac
gacgtcctgcagccggtcgccggcatcctcgacgtcctggacaactacgcgttcgtccgg
acctccgggtacctggccggccccaacgacgtgtacgtctcgatgaacatggtgcgcaag
aacggcctgcgccggggcgacgccatcaccggtgcggtccgcgtgccgcgtgagggggag
cagggcaaccagcgccagaagttcaacccgctggtccggctcgacacggtcaacggcggc
gacgtcgaggccgccaagcgccgcccggagttcaacaagctcaccccgctgtacccgaac
cagcggctgcggctcgagaccaccccgaacatcctgaccacccgcgtgatcgacctgatc
atgccgatcggcaagggccagcgtgccctgatcgtctcgccgcctaaggccggcaagacg
acggtgatgcaggacatcgcgaacgcgatcacgaccaacaaccccgagtgctacctcatg
gtcgtgctggtggacgagcggcccgaagaggtcaccgacatgcagcgctcggtcaagggc
gaggtcatcgcctcgaccttcgaccggccgccgtcggaccacacgtcggtcgccgagctt
gcgatcgagcgggccaagcggctcgtcgagcagggccgcgacgtggtcgtcctgctcgac
tcgatcacgcgcctcggccgcgcgtacaacaactcgtcgccggcgtcgggccgcatcctc
tccggtggtgtcgactcgaccgccctgtacccgccgaagcggttcctgggcgcggctcgc
aacatcgagaacggcggctcgctcaccatcatcgccacggccatggtggagacgggttcg
acgggcgacacggtgatcttcgaggagttcaagggcaccggcaacgccgagctcaagctc
gaccgcaagatcgccgagcggcgcgtgttcccggcggtggacgtcaacccctccggtacg
cgcaaggacgagctgctgatgagccccgacgagttcgcggtggtgcacaagctgcgccgc
gtgctctccggtctggactcgcaccaggccatcgatctgctcatcgaccggctcaagaag
agcaagagcaacatcgagttcctcctgcaggtgtcgaagacggcaccgggagcgctcgac
gactga
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