Rhodococcus sp. M8-35: QWU03_27305
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Entry
QWU03_27305 CDS
T11613
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhmz Rhodococcus sp. M8-35
Pathway
rhmz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhmz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QWU03_27305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhmz03019
]
QWU03_27305
03009 Ribosome biogenesis [BR:
rhmz03009
]
QWU03_27305
Enzymes [BR:
rhmz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QWU03_27305
Messenger RNA biogenesis [BR:
rhmz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QWU03_27305
Ribosome biogenesis [BR:
rhmz03009
]
Prokaryotic type
rRNA helicases
QWU03_27305
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
HEM4
UvrA_inter
CMS1
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WVN81606
LinkDB
All DBs
Position
5789694..5791628
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AA seq
644 aa
AA seq
DB search
MSDTVQDPEADTATPTFADLDIDARVLQALSDVGYETPSPIQAATIPPLLEGRDVVGLAQ
TGTGKTAAFAVPILSRIDTAVKRPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYG
GQSYGVQLSGLRRGAHVIVGTPGRVIDHLAKGTLDISELEFLVLDEADEMLTMGFQEDVE
RILADTPETKQVALFSATMPGAIRRLSKQYLHDPVEITVKSKTTTSANITQRWVLVSHQR
KLDALTRILEVEQFEAMILFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQL
KSGALDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGDALLFVAP
RERHLLKAIERATRQPLTEIQLPSVEDVNAQRVEKFNDSITEALTSDHLSLFRTFVEDYE
REHDVPLADIAAALAVLSRDGESFLMEAEPEPVAPPRREREPRERPPRRFDDDGASRVGR
DGQEMATYRIAVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPKDLSPET
LEALRGTRISGVLIQLQPDSGAPAGRPSTYRQRDDRGERRQGERKEYGGKKDWGDRGGRN
KDFGGRGDRFGDKPNRGFRERSGERGQSGGHGSGGHNGGYRGRD
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatactgtgcaagaccccgaagccgacaccgctacccccacgttcgccgatctg
gacatcgacgcccgtgtgctgcaagcgctttcggatgtgggctacgagaccccgtcgccg
atccaggcggccaccatcccgccgctgctggagggacgcgacgtcgtcggtctcgcgcag
accggcaccggcaagaccgccgcgttcgcggtgccgatcctgtcgcggatcgacaccgcg
gtgaagcggccccaggcactggtcctggctcccacccgtgagctcgccctgcaggtcgcg
gaggctttcggtaagtactcggcgcacatcccgggtctgcacgtgctgcccatctacggt
ggccagagctacggcgtgcagctgtccgggctgcgccgtggcgcgcacgtcatcgtgggc
acccccggacgtgtgatcgatcacctcgccaagggcaccctcgacatctccgaactcgag
ttcctcgtgctcgacgaggccgacgagatgctcaccatgggcttccaggaggacgtcgaa
cggatcctcgccgacaccccggagaccaagcaggtcgcgctgttctcggcgaccatgccg
ggcgcgatccgccggctgtccaagcagtacctgcacgacccggtcgagatcacggtcaag
tcgaagacgacgacgtcggcgaacatcacccagcgctgggtgctcgtgtcgcaccagcgc
aagctcgacgccctgacccggatcctcgaggtcgagcagttcgaggcgatgatcctcttc
gtccgtacgaagcaggccaccgaggacctcgcggagcggctgcgagcccgcggtttctcg
gccgccgcgatcaacggcgacatcgtgcaggcccagcgcgaacgcaccatcggccagctc
aagagcggtgcgctggacatcctcgtcgcgacggacgtggcggcccgcggtctggacgtc
gaccgcatcagccacgtcgtgaactacgacatcccgcacgacaccgagtcctacgtgcac
cgcatcggccgcaccggccgcgccgggcgcagcggtgacgccctgctgttcgtcgccccc
cgcgagcggcacctgctcaaggcgatcgagcgggccacccggcagccgctcaccgagatc
cagctgccgtcggtggaggatgtcaacgcccagcgcgtcgagaagttcaacgattcgatc
accgaggcgctcacgtcggatcacctgtcgctcttccgcacgttcgtcgaggactacgag
cgcgagcacgacgtgcccctcgccgacatcgcggcggcgctggccgtgctctcccgcgac
ggggagtcgttcctcatggaggccgaacccgagcccgtggcgccgccgcggcgggaacgc
gagccgcgggagcggccgccgcgccggttcgacgacgacggtgcgtcacgcgtcgggcgc
gacgggcaggaaatggcgacctaccgcatcgccgtgggtaagcggcaccgggtggtgccg
ggcgcgatcgtcggcgccatcgccaacgagggcggcctgcgccgcagcgacttcgggcac
atcagcatccgcccggaccacagcctcgtcgagctgccgaaggacctgtcgccggagacg
ctcgaggcgttgcgcggcacccgcatctccggggtgctcatccagctgcagcccgacagc
ggcgcaccggcgggtcggccgtcgacctaccgtcagcgcgacgaccgcggcgaacgccgt
cagggtgagcgcaaggagtacggcggcaagaaggactggggcgatcgcggcggccgcaac
aaggacttcggtgggcgcggcgaccggttcggagacaagccgaaccgcggattccgtgaa
cgctccggcgagcgcgggcagtccggtggacacggctcgggcggccacaacggcggctac
cgcgggcgcgactga
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