Rhizobium sp. N1341: AMJ98_CH00027
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Entry
AMJ98_CH00027 CDS
T04420
Name
(GenBank) double-strand break repair helicase AddB type protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
rhn
Rhizobium sp. N1341
Brite
KEGG Orthology (KO) [BR:
rhn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhn03400
]
AMJ98_CH00027
Enzymes [BR:
rhn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMJ98_CH00027
DNA repair and recombination proteins [BR:
rhn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
AMJ98_CH00027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
ANL07771
LinkDB
All DBs
Position
complement(26033..29227)
Genome browser
AA seq
1064 aa
AA seq
DB search
MADRHQPRILTIPAGLPFLKMLATTLCDGRLTPLFRHEPDDPLSLARVTIYLPTRRAVRV
LRSEFVDLLGGRSAILPVIRPLGETDDDSGYFEEALPATIDLAQPLSNTARLLELARLIL
AWRNKLPEIVRHIHSDSPLVAPASPADAIWLARNLAELIDSIETEDLDWSELSKLDTGDY
AAWWQLTAEFLQIASAFWPERLSELGKSSPARHRNAILRAEAARISAAKPAGPIIIAGST
GSVPATADLIAAVANLPEGVIVLPGLDLSMPERHWQMVAPEPAPGQHANPAGRSHPQYGL
SSLLKRLRLTRADIGLLEKPEADLDQRAEILSRALAPAEATSDWGAWKGALPEGALTSAF
ADVSLIEAANEREEATAIAIALRLALERPGQDGESRAALITPDRNLARRVMAELSRFGIL
ADDSAGTPLSATPQGTLLQLLLEAALRPGDPVAIVSLLKHPLARFGLERDALISATEALE
LLALRGGVAEVDINALESLLTHQLGEQALDRHAPQWRKALPAEAVETASELARRVTRATE
PLASTLVRHRPEERGKTARFTLSEWAERTGRSLEAVAADPHGNLADLWSHEAGDALASLL
GEVIDTDGQMEADGPQWIDIMAALAAGHAVKPRALSHPRLFIFGTLEARLQSVDTLILGG
LNEGSWPAQSANNPFIPRMMKTEIGLEPPERRIGQLAHDFEMANGTRHLIYSRALRQGST
PTVASRWLQRLLALGGEAFEAALRERGNRYLQWAGLIDRGEDQTPAQRPSPKPPLALQPK
SYSFSEVGRLRRDPYAIYARRILRLDPVDAFNRDPGAAERGTLYHTIIDRFIREAHVAGT
PEAAAAMEGIVAELFDMEKLPPHIDAVWRPRFREVARAFLEWEAGRRPAIRRTLTEVRGG
VELEAINVRLNGVADRIDITGPGAADIIDYKTGYNPSPAQARALLDPQLALEAAALSAGA
FRDAGSLVPQDLLYVRLRPGRRFQVDTVNNENSARSDKAKSAMDLAADSIDQLIKFVSLL
QSGEKGFTSRLIPAQQFDFGGDFDHLARVSEWSTAETEEGGGDE
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcaccagccacgcatcctgacgatcccggcgggcctgcccttcctgaaa
atgctggcgacgacgctttgcgacggccgcctgacgcccctctttcggcatgagcccgat
gatccgctgtcgctcgccagggtgacgatctacctgccgacccgccgcgccgtgcgcgtg
ctgcgctcggaattcgtcgacctgctcggcggccgctcggcgatcctgccggtgatccgt
cctctcggcgaaactgatgacgacagcggatatttcgaagaggcgttgccggcgacgatc
gatctcgcccagccgctgtcgaataccgcccggctcctggaactggcgcggctgatcctt
gcctggcgaaacaaactgccggagatcgtccgtcacatccattccgactcgccgctcgtt
gcgccagcaagcccggcggatgcgatctggctcgcccgcaacctcgcggagctgatcgat
tccatcgaaaccgaggatcttgactggtcggaactgtcgaaactcgacaccggcgactac
gccgcctggtggcagctgacggcggagttcctgcagatcgccagcgccttttggccggag
cggctttccgagcttggcaagtcctcgccggcgcggcacagaaacgccattctgcgggcc
gaagcagccaggatttcggcggcgaagccggccgggccgattatcatcgccggttcgacg
ggttcggttcctgctacggccgatctcatcgccgccgttgccaatctgcctgaaggcgtg
atcgtccttcccggcctcgatctctccatgcccgagaggcattggcaaatggtggcgccg
gagccggcgccgggccagcatgccaacccggccggccggagccatccgcaatatggcctg
tcctcgctgctgaagaggctgaggctgacacgagccgatatcggcctcctggagaagccg
gaggccgatcttgaccagcgcgccgaaatcctgtcgcgcgcgctcgccccggcagaggcg
acgagcgactggggggcctggaagggcgcgctgcccgagggagcgctgacttcggccttc
gccgatgtttcgctgatcgaagccgccaatgagcgcgaggaagcaaccgcaattgccatc
gccctcaggctggcgttggaaaggccgggacaggacggcgagagccgggctgcgttgatc
acgccggaccgcaatctcgcccgtcgggtgatggcggaactttcccgcttcgggattctc
gccgacgattcggccggcactccgctttcggcgacgccgcagggcacgctgctgcagctg
ctgctggaggcggcgttgcggccgggcgacccggtggcgatcgtgtcactgctcaaacat
ccgctggcgcgcttcggtctcgaacgcgatgccctgatttccgcgaccgaagcgctcgaa
ctgctggcgctgcgcggcggcgtggcggaggtggatatcaacgcgctcgaatcgctcctg
acccaccagctcggcgaacaggccctggaccgacacgcgccgcaatggcgcaaggcgctg
ccagccgaggccgtcgagaccgcatccgaacttgcccgccgagtcacccgcgcgacagag
ccgcttgcttccacgctggtccggcaccggccggaagagcgcggcaagacggcacgtttc
acgctgtccgaatgggcggagcggaccggccgttcgctggaagcggtcgcggcagatccg
cacggcaatcttgccgatctctggtcgcacgaggcaggcgacgcccttgcctcgcttctt
ggcgaagtgatcgacacggacggccagatggaggccgacggaccgcaatggatcgacatc
atggccgcgctcgccgccggccatgcggtgaagccgcgggccctcagccatccccgcctc
ttcatcttcggcacgctggaagcccgcctgcagagcgtcgacacgctgatcctcggcgga
ttgaacgaaggctcctggccagcgcagagcgccaacaatcccttcattccgcgcatgatg
aagacggagatcgggctcgaaccgccggagcggcgcatcggccagctggcgcatgatttc
gagatggcgaacggcactcgccacctgatctattcgagagcgctgcgccaaggttcgacg
ccgacagtcgcctcacgctggctgcagcgactgctggcgctcggcggagaggcatttgag
gcggcattgagagagcgcggcaaccggtatctgcaatgggccggtctcatcgatcgggga
gaggaccagacaccggcgcagcggccctcgccgaaaccgccgctggcgctgcagccgaaa
tcctattccttcagcgaggtcggacggctgcgccgcgatccctacgccatctatgcccgt
cgcatcctgcggctcgatccggtcgacgcgttcaaccgcgacccgggagcggcagaacgc
ggaacgctctatcacacgatcatcgaccggttcatccgcgaggcgcatgtggccggcacg
ccggaggcggcagcggcgatggaggggatcgttgccgagcttttcgacatggagaagctg
ccgccgcatatcgatgctgtctggcggccgcgctttcgcgaggtagcccgtgccttcctc
gaatgggaggccggacggcgtcccgccatccgcaggacgctgacggaagtgcgcggcggc
gtggagctggaggcgatcaatgtccggctgaacggcgttgcggaccggatcgatattaca
ggaccgggagcggccgatatcatcgactacaagaccggctacaacccttcaccggcacag
gcacgcgcgcttctcgatccgcagctcgcgctggaagcggcggctttgagcgccggcgcc
ttccgcgatgccggcagtctcgtcccgcaggatctgctctatgtccgtctgcgtccggga
cgccggttccaggtcgatacggtgaacaatgagaactcggcccgcagcgacaaagcaaaa
tcagcgatggacctcgccgcggactcgatcgaccagctgatcaagttcgtcagtttgctg
cagtccggcgaaaagggctttacctcgcggctcattccggcgcagcagtttgatttcggc
ggcgatttcgatcatctcgcccgcgtctccgaatggtcgacggccgagaccgaggaaggc
ggcggcgatgagtga
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