Rhizobium sp. N1341: AMJ98_CH00417
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Entry
AMJ98_CH00417 CDS
T04420
Symbol
ihfB
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
rhn
Rhizobium sp. N1341
Brite
KEGG Orthology (KO) [BR:
rhn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhn03032
]
AMJ98_CH00417 (ihfB)
03036 Chromosome and associated proteins [BR:
rhn03036
]
AMJ98_CH00417 (ihfB)
03400 DNA repair and recombination proteins [BR:
rhn03400
]
AMJ98_CH00417 (ihfB)
DNA replication proteins [BR:
rhn03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
AMJ98_CH00417 (ihfB)
Chromosome and associated proteins [BR:
rhn03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
AMJ98_CH00417 (ihfB)
DNA repair and recombination proteins [BR:
rhn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
AMJ98_CH00417 (ihfB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_1
HU-CCDC81_euk_2
HU-CCDC81_bac_2
Regnase_1_C
Motif
Other DBs
NCBI-ProteinID:
ANL08145
LinkDB
All DBs
Position
complement(421138..421437)
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AA seq
99 aa
AA seq
DB search
MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS
GRNPRTGDTVFVEEKWVPFFKTGKELRERLNPGQADEED
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
gtgatcaagtccgaattggtgcagattgttgcggcacgcaacccgcatctctatcatcgc
gacgtcgaaaatatcgtcaacgcggttctcgacgagatcaccgatgcactggctgcgggc
aaccgcgtcgaattgcgcggcttcggcgcgttttcggtcaagaaccgcccttcccgctcc
ggccgcaacccgcgcaccggcgataccgtcttcgtcgaggaaaagtgggttcccttcttc
aaaacaggcaaggaactgcgcgagcggctcaatcccggccaggccgacgaagaggattga
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