Rhizobium sp. N1341: AMJ98_CH01412
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Entry
AMJ98_CH01412 CDS
T04420
Name
(GenBank) cadherin-like/VCBS repeat-containing protein
Organism
rhn
Rhizobium sp. N1341
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4082
DMFA2_C
He_PIG
Cadherin_4
Big_9
Mo-co_dimer
BatD
Motif
Other DBs
NCBI-ProteinID:
ANL09122
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All DBs
Position
1427953..1432416
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AA seq
1487 aa
AA seq
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MYRNARRWTSRSLLVDSLVPRWLTVGGKERPRKPAEKHKDSAQLAASVQTADGHKQGTLV
DGPYKDAALNEHDGGQRAHVNGDADNSLEERPLPDTFATPAEIGIRSGDVAALSAPMPDF
ARFQWRADGVAFGTASSLQRTNTAISSMGDDPLAPYLPQSPAPTVSGHGAPKVAAGRAHS
GKVVILESSPSGQATAHDAGANSLAFGMPFGVCGCGYLTSPTRILDWAHGGALLQQDGQL
PGTRLIEGPDYVATIKPAIGASVSDPLLDRDVSPLSGWTGTATWSDAALTNGTLPGGGET
GTGTKSKDIGILSGSVTKPPKPSTQGSSTTQSLAAAAAVSNAIVLENQKQGNPESEWGID
GAGSSNIEGFATDISVDNGKTISFKINTNSTNYRIDIYRLGYYGGMGARKVATMQHTGLQ
TQPSPLRNATTGTVDAGNWAVSASWTVPDDAVSGVYIAKLVRQDGTSGENHIPFIVRDDD
SHSDVVFQTADETWQAYNGWGGANLYGGNGPATGQGAGRAYAVSYNRPIATRGGVGTYAG
PQDYLFGAEYAGIYWLEQNGYDVSYLSGVDADRYGSLLLNHKTYVDAGHDEYWSGQQRTN
VEAARDAGVNLMFWSGNEVYWRTRWGNAYSADGTPYRTLITYKETWAGGDIDPSDQWTGT
FRDPRFSPPAIGGGNPENSLTGQLFKVDDVGSNLGAITVGYDDANLRFWRNTSVANLQPG
QTATLTKNYLGYEWDEAPDNGFDPAGLVKLSSTTLPVSSYLLDYGNTTGNATATHNLTLY
RAPSGALVFGAGTVYWTWGLSDNHDLTATRTDSRVQQAMVNLLADMGIQPGTLQSGLTAA
TASLDHTAPTSVITVPATATVGSTVTITGTAADTGGGVIAAVEVSTDNGASWHPATGDEN
WTYTWQPQTAGTYTIRSRAVDDNVNLETPSAGRTVTVSGPSYTSLFGSGTPAVVNTNDTS
AVELGFKFQTSVAGTVTGIRFYKGSQDTGTHTGSLWSSTGTRIATLTFTNETASGWQTAY
FTSPVSLTVGQTYTASYHTNTGHYSSTTGYFTSNVTSGPLTAPASGNGVYAYGSNSLFPT
STFQSTNYWVDVMFTTSSSNTTPTAVADTGDATEKGGVANGSGGVVASGNVLTNDTDPDT
GDTKTVTAVRFGTTSGTLGSALNGTYGSLVLNASGAYSYAVNENNATVQALRQSTNTLSD
VFSYTMRDSAGATATANLTITIHGANDAPVLAVQTTTQNATVGSAFSYSLPTTTFTDVDS
GDTLAYAATAADGTALPSWLTFNASTRTFSGTPTTSGTYGIKVTATDLGGLAANETFNIA
VSTAPTTYSLFSASSTPSRTFNDGQQLELGVKFTSNVAGDVTGIRFYRSANDNGQNVVDL
WTATGTKLATATFTTTTASGWQTANFTNPVTIAANTTYVASYHTTGAYVATSNFFTTPVT
SGPLTAPASGNGVYAYGGSATAGLFPTNSYNSTNYYADVVFRPQLVA
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgcaacgctcgccggtggacttcgcgctcactcctggtggattcgttggtgccc
cgatggttgaccgtcggcggaaaggaaagaccgcgcaaacctgccgaaaagcataaggat
agtgctcaacttgcggcatctgttcaaaccgccgatggacacaagcagggcacccttgtc
gacggtccctataaggatgcggccctcaacgagcatgatggcgggcagagagcgcacgtg
aacggcgacgcggacaacagcctcgaagagcggccgttgcctgacactttcgcaacgcct
gccgaaattggtattcgaagcggcgatgtggccgcgctgtcggcgcctatgccggatttt
gcacgtttccagtggcgcgcggatggagttgcgttcgggaccgcatcgtcccttcagcgc
accaatacggcaataagctcaatgggcgacgatcctctggctccctatctgccgcaaagc
cctgcaccgacagtttcggggcatggtgctcctaaggtggcggccgggcgtgctcattcg
ggcaaggtcgtcattctcgaatcgagcccgtcagggcaggcgacggcgcacgacgccggc
gcgaattcgctggccttcggcatgccctttggcgtgtgcgggtgcggctatcttacctcc
cctacgcggattctcgattgggcccatggcggcgccctgcttcaacaggacggtcaattg
ccggggaccaggctgatcgaagggccggactatgtggcgacgatcaagccggccatcggc
gcctcggtcagcgatccgcttctcgatcgtgacgtgtccccactctcgggctggaccggc
actgcaacatggtcggacgcggcgctcaccaatggaaccctgccgggcgggggagagacg
ggaacgggaacaaaatccaaggatatcggtatcctgtccggctctgtgacgaagccacct
aagccttctacgcaggggtcatcgacaacgcagagtctggcggctgcggcggcggtcagc
aacgcgatcgtgctggaaaaccagaagcagggcaatccggagagcgagtggggcatcgac
ggtgccggcagctccaacatcgaagggtttgcgaccgatatcagcgtcgataatggcaag
acgatcagcttcaagatcaataccaattccaccaactaccggatcgatatctatcggctc
ggctattatggcggcatgggggcgcgcaaggtcgcgacgatgcagcacacaggattgcag
acccaacctagtccgttgcgcaatgcgacgaccggcacggtggacgccggtaactgggcc
gtctcggcgtcctggaccgtaccggatgatgccgtttcaggcgtctatatcgccaagctc
gtccgtcaggatggcacctccggcgaaaatcacatcccgttcatcgtgcgcgacgacgac
agccacagcgacgttgtcttccagaccgcggatgagacctggcaagcttacaatggttgg
ggtggcgcaaacctctatggcggcaacggtccggcgacagggcagggtgccggtcgcgcc
tatgccgttagctacaacaggccgatcgcgacgcgcggcggggtcggcacttacgccggc
ccccaggactatctgttcggtgctgaatatgcgggcatctactggctggaacagaacggc
tatgatgtctcctatctgtcgggtgtcgacgccgatcgctatggcagcctgttgctcaat
cacaagacttatgtcgatgccgggcatgacgaatactggtcgggacagcagagaaccaat
gtcgaggccgcgcgcgatgcgggcgtcaacctgatgttctggagcggcaacgaagtctat
tggcgcacccgctggggcaacgcctatagcgccgacggcacgccctaccgcactctgatc
acctacaaggagacatgggcgggcggcgatatcgatccttccgaccaatggacaggcact
ttccgcgatccacgcttcagcccacctgccattggcggcggcaatccggagaattcgctg
accggtcaactgttcaaggtcgacgatgtcggcagcaacctcggtgcgatcaccgttggc
tacgatgatgccaaccttcgcttctggcgcaatacgagcgttgccaatcttcagccgggg
cagacggcgacgctcaccaagaattatctcggttacgagtgggacgaagcacccgataac
ggcttcgatccggctggcctggtgaagctgtcgtcgacgacgcttccggtcagcagctat
ttgctcgattacggaaacacgaccggcaatgcgacggcgacccacaatctgacgctctat
cgcgcgcccagcggcgcgctggtgttcggcgccggcacggtctactggacatggggtctc
agcgacaatcacgacctcacggcgacccggacggactcgcgcgtacagcaggcgatggtc
aatttgcttgctgacatgggcattcagcctggaacgctacagtccgggctcaccgccgcg
accgcttcgttggaccacactgcgccgacatcggtcatcacggtgcccgccacggcgacc
gttggatccaccgtgacgattaccggcaccgctgccgataccggaggcggggtcatcgcc
gcggtcgaggtttcgaccgacaacggtgcgagctggcatccggcgacgggcgatgagaac
tggacttatacctggcagccgcaaaccgcgggcacctatactatccggtctcgcgcagtc
gatgataacgtcaacctggaaacgccctctgcgggacgaacggtcaccgtcagcgggccg
agttacacctctctcttcggttcggggacgcccgcggtcgtcaacaccaacgatacctcg
gcggttgaactcggcttcaaattccagacgtccgtggcaggtaccgtcaccggcattcgt
ttttataagggaagtcaggataccggcacgcataccggttcactgtggtcgagtaccggc
acgaggattgcgaccctcaccttcacgaacgagactgccagcggctggcagaccgcctat
ttcaccagtccggtatcgctgacggtcggacaaacctacaccgcatcttaccataccaat
accggtcactattcgtcgacgaccggctacttcacctcaaatgtaaccagcggtccgctc
acggcgccggccagcggcaacggcgtctatgcctatggcagcaacagcctattccccacg
agcaccttccagtcgacgaactattgggtcgatgtgatgtttacgacgtcgagctcgaac
acgacgccgacggcggttgccgatacaggggatgcgaccgagaagggcggagtggccaat
ggttcgggcggcgtggttgcgagcggcaacgtgctgaccaacgacaccgatccggatacc
ggtgacaccaagaccgtcacggcagtccgtttcgggacgacgtcaggcacgctcggctcg
gcgctgaacggcacctatggcagtctcgtgctcaatgcatcgggtgcctatagctatgcg
gtcaacgagaacaatgcgaccgttcaggcgctgcgacagtcgaccaacacgctgagcgat
gtcttcagctacacgatgcgcgacagcgccggcgccacggccacggcgaacctgacgatc
accatccatggcgccaacgatgcaccggtgctggccgtccagacgacgacccagaatgcc
accgtcggctctgccttctcctactcgctgccgacgaccaccttcactgatgtcgacagc
ggcgacacgttggcgtatgcggcaacggccgccgacggcacggcgctgccttcctggcta
accttcaacgcctcgacgcgcaccttctccggcacgccgacgacgtcgggcacttacggc
atcaaggtgacggcaaccgatctcggcggccttgcggccaacgagaccttcaacattgcc
gtgtcgacggcgccgacgacctacagcctgttctctgcttccagcacgccgagccggacc
ttcaacgatggtcagcaactcgaacttggcgtcaagttcacgtcgaacgttgccggagat
gtcaccggcatcaggttctatcgcagcgccaatgacaacggccagaatgtcgtcgacctt
tggaccgcgacaggcaccaaacttgccaccgccaccttcaccaccaccaccgcgagcggc
tggcagacggcgaacttcacaaaccccgtcaccatcgccgccaataccacctatgtcgcc
tcctaccacacgaccggcgcttatgtggcgaccagcaatttctttaccacccccgtcacc
agcgggccgttgacggccccggccagcggcaatggcgtctatgcttatggcggttccgcc
accgcaggtcttttcccgaccaacagctacaattcaaccaattactacgcggacgtcgtc
ttccggccgcaactggtcgcgtga
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