Rhizobium sp. N1341: AMJ98_CH01648
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Entry
AMJ98_CH01648 CDS
T04420
Name
(GenBank) RNA-metabolising metallo-beta-lactamase hydrolase protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rhn
Rhizobium sp. N1341
Pathway
rhn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMJ98_CH01648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhn03019
]
AMJ98_CH01648
Messenger RNA biogenesis [BR:
rhn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AMJ98_CH01648
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Lactamase_B_3
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ANL09348
LinkDB
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Position
1670002..1671672
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AA seq
556 aa
AA seq
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MAKQDELVFLPLGGVGEIGMNLALYGYGPPEHRQWIMVDCGVTFPGPDLPGVDLVLPDIR
FLANERKNLKAIIITHAHEDHYGALADLWPGLNVPVFASAFTSGLLEAKRNFEKATIGEV
PVTPFKAGDTINVGPFSIEGVAVNHSIPEPMSLMIRTPAGNVIHTGDWKIDHEPSLGPLT
DETRFRQLGDEGVLALMCDSTNALRDGVSPSEKDVSESLRKIIEDAEGRVAITTFSSNVG
RIRTVAEAAEAAGREVLLLGSSLKRVVDVASDIGLMEGVKPFISEEEYGYIPRDKVVVIL
TGSQGEARAALAKLSRDEMRNVAFAAGDIVVFSSRAIPGNEKAIQDIKNGLVEQGVHIIT
DTEALVHVSGHPRRNELQRMYEWTRPKIVVPVHGEATHLTAHKELAEQSGIAIVPRVRNG
DILRLAPGPVEVIGEAPHGRIYKDGLLIGDFDEMGIGERKKLSYVGHVAVNVVLDARYDI
LGDPDLVSIGLPVYDDEGEEMEDTLYDAAISAIESIPRARRKDIDMLQEAVRRAIRAAAN
HAWGKKPVVTAFVTKV
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaacaggacgagttggtattcctgcctctgggcggcgttggcgagatcgggatg
aatctcgctctctatggctacggcccgcccgagcatcgccagtggatcatggtcgattgc
ggcgtcacctttcccggtcccgacctgccgggcgtcgatctcgtgctgcccgatatccgc
ttcctcgccaatgagcgcaagaacctcaaggcgatcatcatcacccatgcccatgaagac
cattacggcgcactcgccgacctctggccgggcctcaacgttccggttttcgcctccgcc
tttacatcgggcttgcttgaagccaaacgcaatttcgagaaggcaacgatcggcgaagtg
ccggtgacgccgttcaaggcaggcgatacgatcaatgtcggccccttcagcatcgaaggc
gtggccgtcaaccattcgatccccgagccgatgtcgctgatgatccgcacgccggctggc
aacgtcatccataccggtgactggaaaatcgatcacgagccttcgctcgggcctctgacc
gatgagactcgattccgccagcttggcgacgagggcgtgctggcgctgatgtgcgattcc
accaacgccctgcgcgacggtgtttcgccctccgaaaaggatgtgtcggaaagcctgcgc
aagattatcgaggatgccgagggccgggtagcgatcaccaccttctcgtcgaatgtcggg
cgtattcgcaccgtcgccgaggctgccgaggcggccggccgcgaagtgctgctgctcggc
agttcgctgaagcgtgtcgtcgatgtcgctagcgatatcggcctgatggaaggggtcaaa
cctttcatttccgaggaggaatacggctatatcccgcgcgacaaggtcgtcgtcatcctg
accggcagccagggtgaggcgcgggccgcccttgccaagctctcccgtgacgagatgcgc
aacgtggcctttgcggcaggcgatatcgtggtcttttcctcgcgtgccattcccggtaac
gaaaaggcgattcaggatatcaagaacggcctcgtcgagcagggcgtgcatatcatcacc
gataccgaggcgctcgtccacgtctccggccatccgcgccgcaacgagttgcagaggatg
tatgagtggacccggccgaaaatcgtcgtgcccgtgcatggcgaggcgacgcatctgacg
gcgcataaagagctggcagagcaatccggcatcgcgatcgtcccgcgggtgcgcaacggc
gatatcctgcggctggcgccaggtccggtcgaggtgatcggcgaagcgccgcatggccgt
atctacaaggacggcctgctgatcggcgatttcgacgaaatgggtatcggcgagcgcaag
aagctctcctatgtcggccatgttgcggtcaacgtcgtgctcgacgcgcgttatgacatt
ctcggcgatcccgatctcgtctcaatcggcctaccggtttatgatgacgaaggcgaggag
atggaagatacgctctacgatgcggcgatcagcgccatcgaaagcattccgcgcgcccgc
cgcaaggatatcgacatgctacaggaggccgtgcgccgtgccatccgcgcagccgcaaat
cacgcctggggcaaaaagcccgttgtcaccgccttcgtcaccaaggtctga
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