Rhizobium sp. N1341: AMJ98_CH01655
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Entry
AMJ98_CH01655 CDS
T04420
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rhn
Rhizobium sp. N1341
Pathway
rhn03030
DNA replication
rhn03430
Mismatch repair
rhn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMJ98_CH01655 (dnaE1)
03430 Mismatch repair
AMJ98_CH01655 (dnaE1)
03440 Homologous recombination
AMJ98_CH01655 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhn03032
]
AMJ98_CH01655 (dnaE1)
03400 DNA repair and recombination proteins [BR:
rhn03400
]
AMJ98_CH01655 (dnaE1)
Enzymes [BR:
rhn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AMJ98_CH01655 (dnaE1)
DNA replication proteins [BR:
rhn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AMJ98_CH01655 (dnaE1)
DNA repair and recombination proteins [BR:
rhn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AMJ98_CH01655 (dnaE1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
McdB_C
Motif
Other DBs
NCBI-ProteinID:
ANL09355
LinkDB
All DBs
Position
1677427..1680924
Genome browser
AA seq
1165 aa
AA seq
DB search
MAETEKGSMGEATGGTPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNL
FVALEFSQKAMDEGLQPIIGCQVSIDMEDGLESEKRGGQPALIKLPSIVLLAATEAGYER
LVDLVSRAYLGGDSNQAIHIRTSWLEEAGTEGLIALTGALTGPVDAAVREGHSAQAEARL
LTLKRLFGDRLYVELQRHGTYDKRHEQKIVGLAYTHDLPLVATNEAFFPTRDDYDAHDAL
MAVAHNAIVSDDSRFRLTPDHYLKSRAEMAKLFADLPEALENTIEIARRCSFVLKTRKPI
LPRFTGATDDAEEAERAEAGELRRQAVEGLDMRLSTLGMSPGYEEKDYRERLEFELGVIE
RMRFPGYFLIVSDFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLN
PERVSMPDFDIDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPY
GQVDKICKLVPNNPANPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTH
AAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDF
VAKRGINVDLAAIPLDDKPTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVA
LYRPGPMENIPTYNARKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLG
EADLLRRAMGKKIKAEMDQQRERFVVGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAA
YAIVSYQTAYMKAHYPVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHF
ETGDNRIYYALAALKGVGESAVDHIVEVRGDKPFASIEDFCLRIDPRQVNRRVLESLIYA
GAFDCFGTDRAQLAAGLDRILGYAQRAQENKLSGQSDIFGSALNSGPEKISLPPYSPWLA
SERLLKEFQVLGFYLTAHPLDSYSNILQKMRVQTFAEFSQAIKQGAANARLAGTVISKQE
RKTRTGNKMGIIVFSDSSGQFEAVLFSEMLNQYRDVLESGKSFLLTATGEERPEGIGLRI
QTIQSLEEKSLQMQKALRVYIRDSGPLKMVAGHLNTKGDGLVSFIVIKEEGKREVEVALP
EKYRITPEIAAALRAAPGVVDVELV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggcggagacggaaaagggttcaatgggtgaggcgaccggcggcacgccgggcttcatc
cacctgagggtccattccgcctattcgcttcttgagggcgcgctgcctctgaagaagatc
ctctataaggcgaccggcgacagtcagccggcgatcgccattaccgacaccaacaatctc
ttcgtcgcccttgaattctcccagaaggcaatggacgagggcctgcagccgatcatcggc
tgccaggtctcgatcgacatggaagacggattggaaagcgaaaagcgcggcggtcagccg
gccctgatcaagctgccgtcgatcgttcttcttgccgcgacggaggctggttacgaaagg
ctggtcgatctcgtcagccgcgcctatctcggcggcgatagcaaccaggccattcatatc
agaacctcctggctggaagaggcaggcacggaagggctgatcgccttgaccggcgccctg
accgggccggtcgacgcagctgtcagggaaggtcattccgcccaggcggaagcccggctg
ctcacgctgaagcgtctcttcggcgacagactctatgtcgagctgcagcggcacggcacc
tacgacaagcggcacgagcagaagatcgtcgggcttgcttacacgcatgacctgccgctc
gtcgccaccaacgaggcgttctttccgacccgcgacgattacgacgcccatgatgcgctg
atggcggttgcgcataacgccatcgtctccgacgacagccgttttcgcctgactccggat
cactacctgaagagccgggctgagatggccaagctctttgccgacctgccggaagcgctt
gagaacacgatcgagatcgccaggcgctgctccttcgtgctgaaaacgcgaaagccgatt
ctgccgcgtttcacgggcgccaccgacgatgccgaggaggcggaacgcgccgaggcgggc
gaattgcgccgtcaggcggtggaagggctggacatgcggctttcgaccctcggcatgtcg
cccggttatgaggaaaaggattatcgcgagcggctggagttcgagctcggcgtcatcgag
cgcatgcgcttccccggttacttcctgatcgtttccgacttcatcaaatgggccaagcag
cacgacatcccggtcggtcccggccgcggttcgggggcaggttcgctggtcgcctatgcc
ttgacgatcaccgatgtcgacccgctgcgcttctcgctactgttcgagcgcttcctcaat
ccggaacgcgtctcgatgcctgatttcgacatcgacttttgccaggaccgccgcgaagag
gtgatccgctacgtccaggccaagtacggccgcgagcaggtggcgcagatcatcaccttt
ggttcgctgcaggcgcgtgccgcacttcgcgacgtcggacgcgtgctggaaatgccttac
ggccaggtcgacaagatttgcaaactcgtgccgaacaatcccgccaatccgacgccgctt
tccaaggcgatcgaggaggagccgaagctgcaggaggaggcggcgaaagaaccggtggtg
gcgcggctgctcgacatcgcccagaagatcgaagggctttatcgccacgcctcgacccat
gccgccggcatcgtcatcggcgaccggccgctttccaagctggtgccgatgtatcgcgat
ccgcgctccgacatgcctgtcacccagttcaacatgaagtgggtggagcaggccggcctc
gtcaaattcgacttcctcggtctgaagacgctgacggtgctgaaggtcgccgtcgatttc
gtcgccaagcgcggcatcaatgtcgatcttgcggccattcctctcgacgacaagccgacc
tacgagatgctgtcgcgcggcgagacggtcggcgtgttccaggtggaaagtgcgggcatg
cgcaaggcgctgatcggcatgaagccggactgcatcgaggacatcatcgcgctggtggcg
ctttaccgccccggcccgatggagaacatcccgacttacaatgcccgcaagcacggcgat
gaagagctggaatcgatccatccgatgatcgaccacctgctcaaggagacgcagggcgtc
atcgtctatcaggaacaggtgatgcagatcgcccaggtcctgtcgggctattcgcttggc
gaagccgaccttctgcgccgcgccatgggtaagaagatcaaggcggagatggaccagcag
cgggaacgcttcgtcgtcggcgccgtcaagaacggcgtatcaaagccgcaagccgacaac
atcttcgaactcttggcgaagttcgcaaactacggcttcaacaagtcgcacgccgccgcc
tacgcgatcgtctcctaccagacggcctacatgaaggcgcactatccggtcgaattcctc
gccgcctcgatgacgctcgacatgtccaacacggaaaaggtcaatgatttccgtcaggac
gccaagcggctcggcatcgaggtgatcgcgccttcggtgcagacctccttccgccatttc
gagaccggcgacaatcgtatctactatgcgctggccgccctcaaaggcgtcggcgaatcc
gccgtcgaccacatcgtcgaggtgcgtggcgacaagccttttgccagcatcgaggatttc
tgcctgcgcatcgatccgcgccaggtgaaccgccgcgtgctcgaaagcctgatctatgcc
ggcgccttcgattgtttcggcaccgaccgagcccagctggccgccggcctcgaccgcatt
ctcggttatgcccagcgcgcccaggaaaacaagctgagcggccagtcggatatttttggc
agcgcactaaactcaggcccggagaagatctccttgccgccctattcaccctggctggca
tcggagcggctgctcaaggaatttcaggtgctgggcttctatctgacggcccacccgctc
gattcctacagcaacatcctgcagaagatgcgtgtgcagacctttgccgagttttctcag
gcgatcaagcagggggctgccaatgcgcgtcttgccggaaccgtcatctcaaagcaggag
cgcaagacccgcaccggcaacaagatgggcatcattgtcttttccgattcgtcaggccag
ttcgaggcggtgctgttttcggagatgctgaaccagtatcgcgacgtgctcgagtccggg
aaatccttcctgctgaccgcgaccggtgaggagcggccggagggtatcggtcttcgcatc
cagacgatccagtcgcttgaggaaaagtcgctgcagatgcagaaggcgctgcgcgtctat
atcagagattccggaccgctgaaaatggttgccggccatctgaataccaagggcgacggt
ctggtttccttcattgtcatcaaggaagagggcaaacgcgaggtggaagtggcgctgccg
gagaaataccgcatcactccggagattgccgctgcccttcgcgccgcccccggcgtcgtc
gacgtcgagcttgtctga
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