Rhizobium sp. N1341: AMJ98_CH02158
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Entry
AMJ98_CH02158 CDS
T04420
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
rhn
Rhizobium sp. N1341
Pathway
rhn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AMJ98_CH02158 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhn03400
]
AMJ98_CH02158 (uvrA)
DNA repair and recombination proteins [BR:
rhn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AMJ98_CH02158 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AMJ98_CH02158 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
BCA_ABC_TP_C
DnaJ_CXXCXGXG
AAA_29
AAA_16
nSTAND1
RsgA_GTPase
AAA_25
AAA_21
AAA_33
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ANL09824
LinkDB
All DBs
Position
complement(2163890..2166811)
Genome browser
AA seq
973 aa
AA seq
DB search
MSELKTISIRGAREHNLKSIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESL
SAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGV
PYSPATGLPIESQTVSQMVDRILAFGEGTRLYILAPLVRGRKGEYKKELAELMKKGFQRV
KVDGQFYEIAEAPVLDKKYKHDIDVVVDRIVVRPDVSARLADSLETCLKLADGLAIAEFA
DKPLPPEETSAGGSANKSLNETHERVLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPT
CDGLGAQQKIDPDLIVPEPERTLRDGAIAPWAKSTSPYYNQTLEALGKHYGFKLGTRWND
LSDEAKDVILNGTDDKIEFHYADGARSYTTHKNFEGIITNLERRWKETDSAWAREDIERF
MSAAPCPACNGFRLKPEALAVKIDKLHIGEVTGMSIRIARDWFEALPATFNAKQNEIAVR
ILKEIRDRLRFLNDVGLEYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIG
LHQRDNARLLDTLKHLRDIGNTVIVVEHDEDAILTADDVVDIGPAAGIHGGEVIAHGTPQ
DIMDNPKSLTGKYLSGELGVPVPEERRKPKKGREIKVIGARGNNLKNVTASIPLGVFTAV
TGVSGGGKSTFLIETLYKSAARRVMGAREIPADHDRIDGFEHIDKVIDIDQSPIGRTPRS
NPATYTGAFTPIRDWFAGLPEAKARGYQPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDV
YVTCDVCHGKRYNRETLDVTFKQKSIADVLDMTVEEGVDFFAAVPAVRDKLQSLKDVGLG
YIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFHDVAKLLEMLHELV
NQGNSVVVIEHNLEVIKTADWVLDFGPEGGDGGGEIVATGTPEAIVREKRSYTGQFLKEL
LERRPAKKAVAAE
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaactgaagacgatctccatccgcggcgcgcgcgagcacaatctgaagagcatc
gatctcgatctgccgcgcaacaagctgatcgtcatgaccgggctttcgggatccggcaaa
tcctcgctcgccttcgacaccatctatgccgagggccagcggcgctatgtcgaaagcctg
tcggcctatgcccggcaattcctggaaatgatgcagaagcccgatgtcgaccagatcgac
gggctgtcgcctgccatttcgatcgagcagaagaccacctcgcgcaacccgcgctcgacg
gtcggcacggtcaccgagatctacgattacatgcgcctgctctttgcccgcgtcggcgtt
ccctattcgccggcgacaggcctgccgatcgagagccagaccgtcagccagatggtcgac
cgcatcctcgctttcggcgagggtactcgtctctatattctcgcgccgctcgtgcgcggc
cgcaagggcgaatacaagaaggaactggcggagctgatgaagaagggcttccagcgcgtc
aaggtcgatggccagttctacgagatcgccgaggcgcctgttctcgacaagaaatacaag
cacgatatcgacgtggtggtcgaccggatcgtcgtgcgcccggatgtctcggcacgcctg
gccgacagccttgaaacctgcctgaagctcgccgacgggctggcgatcgccgaattcgcc
gacaagccgctgccgccggaagagacctcggccggcggttcggccaacaagtcgctgaac
gaaacgcatgagcgcgtgctgttttcggagaaattcgcctgcccggtttcgggcttcacc
atcccggaaatcgaacccaggctcttctccttcaacaatcccttcggcgcctgcccgacc
tgcgacggtctcggcgcccagcagaagatcgaccccgacctgatcgtgcccgaaccggag
cggactttgcgcgacggagcgatcgcgccctgggccaagtcgacctcgccctattacaac
cagacgctggaagcgctcggcaaacattacggcttcaagctcggcacccgctggaacgac
ctgtccgacgaggccaaggacgtcattctcaacggcaccgacgacaagatcgagttccac
tacgccgacggcgcccgctcctatacgacgcacaagaatttcgagggcatcatcaccaat
ctcgaacgccgctggaaggagaccgattccgcctgggcgcgcgaggatatcgagcgcttc
atgtcggccgccccctgcccggcctgcaacggcttccgcctgaagccggaagcgctggcg
gtgaagattgacaagctgcatatcggcgaagtcaccggcatgtcgatccgcatcgcgcgc
gactggttcgaggcactgccggcgacgttcaacgccaagcaaaacgaaatcgccgtccgc
attctcaaggaaatccgcgaccgcctgcgctttttgaacgatgtcggcctggaatatctg
agcctttcgcgcaattccggcacgctatcgggtggcgagagccagcgcatccggctcgcc
tcgcagatcggttcggggctgacgggcgtgctctacgtgctcgacgagccgtcgatcggc
ctgcatcagcgcgataacgcccggctgctcgacacgctgaagcacctgcgtgacatcggc
aacaccgtcatcgtcgtcgagcatgacgaggatgcgatcctgacggccgacgacgtggtg
gatatcggtccggccgccggcatccatggcggtgaggttatcgcccatggcacgccgcag
gacatcatggacaatccgaagtcgctgaccggcaaatatctctccggcgaactcggcgtt
cccgttcccgaagagcgccgcaagccgaagaagggccgcgaaattaaggtgatcggcgca
cgcggcaacaatctgaagaacgtcaccgcgtcgatcccgctcggcgtcttcacggcggtg
accggggtttccggcggcggcaaatccacttttctgatcgagacgctctataaatcggcg
gctcgccgcgtcatgggcgcgcgcgaaattccggccgaccacgaccgcatcgacggtttc
gagcatatcgacaaggtgatcgatatcgaccagtcgccgatcggccgcacgccacgctcg
aatccggcgacctataccggcgccttcacgccgatccgcgattggttcgccggcctgccg
gaagccaaggcgcgcggctaccagccgggccgcttctccttcaacgtcaagggcggacgc
tgcgaagcctgccagggcgacggcgtcatcaagatcgagatgcacttcctgcccgatgtc
tacgtcacctgcgacgtctgccacggcaagcgctataaccgcgagacgctcgacgtgacc
ttcaagcagaagtcgatcgccgacgtgctcgacatgacggtggaggaaggcgtcgatttc
tttgcggcagtccccgccgtgcgcgacaagctgcaatcgctgaaggatgtcggcctcggt
tacatcaaggtcggtcagcaggccaatacgctctcgggcggcgaagcgcagcgcgtcaag
ctcgccaaggaactgtcgaaacgttcgaccggacgtacgctctacattctcgacgagccg
acgaccggcctacacttccacgacgtcgccaagctcctggaaatgctgcacgagctcgtc
aaccagggcaattccgtcgtggtgattgagcacaatctcgaagtcatcaagacagcggac
tgggtgctcgatttcggccccgaaggcggcgatggcggcggcgagatcgtcgcgaccggc
acaccggaagcgatcgtcagggaaaagcgctcctataccggccagttcctgaaggagttg
ctggagcggcggccggcgaagaaggcggtcgcggcggaatga
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