Rhizobium sp. N1341: AMJ98_CH02984
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Entry
AMJ98_CH02984 CDS
T04420
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhn
Rhizobium sp. N1341
Pathway
rhn03420
Nucleotide excision repair
rhn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AMJ98_CH02984 (uvrD)
03430 Mismatch repair
AMJ98_CH02984 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhn03400
]
AMJ98_CH02984 (uvrD)
Enzymes [BR:
rhn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMJ98_CH02984 (uvrD)
DNA repair and recombination proteins [BR:
rhn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AMJ98_CH02984 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
AMJ98_CH02984 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_11
DUF4420
Motif
Other DBs
NCBI-ProteinID:
ANL10623
LinkDB
All DBs
Position
3009233..3011710
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AA seq
825 aa
AA seq
DB search
MSNSFDDIPFFDEEPGEVARKPQPSVATAGRPAAGGGIAARAMAARDGGKRPDYLAGLNP
EQTEAVETLEGPVLVLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTNKAAREMKE
RIALLVGGAVEGMPWLGTFHSIGVKLLRRHGELVGLSSGFTILDTDDVVRLIKQLIQAEG
LDDKRWPAKQFAGMIDTWKNKGLGPADIPEGDARAFANGRGRELYFAYQARLTTLNACDF
GDLLMHPITIFRKNPDLLKEYHGRFRYILVDEYQDTNTAQYMWLRLLAQRAKGEPQNVCC
VGDDDQSIYGWRGAEVDNILRFEKDFPGAKVIKLERNYRSTEHILGAAAHLIAHNEGRLG
KTLFTDRADPDDVKVQVHASWDSEEEARAIGEEIEQLQRSKHLLNDMAILVRASFQMREF
EDRFVTLGLNYRVIGGPRFYERLEIRDAMAYFRLVAQPADDLAFERIINTPKRGLGDTTV
RALHDYARARDVPMLAAAADIIETDELKPKARKALFDVIQSFRRWQELLENTPHTELAEQ
ILEESGYTDMWKNDKSAEAPGRLENLKELIRSMESFESMRGFLEHVSLVMDAETNENLDA
VSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRSLDESGRAGLEEERRLAYVGITRAKRRCH
IWFVSNRRIHGLWQSTLPSRFLDELPESHVEVAEMEQSYGGYGRGGYGQSRFDKAEPFAN
SYSTPGWKRAQANKTDATRDNWGTRSGHAVERIGYGESGPKGRMIDGELVAKSTSSEPSR
FTLGDRVFHMKFGNGNITGIEGNKLTIDFDRAGQKRVLDGFVERV
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatagtttcgacgatattcccttcttcgacgaagagccgggcgaagtggcgcgc
aagccgcagccgtctgtcgcaactgccggaaggccagccgccggcggcggcatcgccgca
cgcgccatggcggcccgtgacggcggcaagcggccggattatctcgccggattgaacccg
gaacagaccgaagccgtcgaaacgctggaaggccccgtcctcgtgctcgccggcgccggc
accggaaagacgcgcgtgctgacgacccgcatcgcccatatcctcaataccggccgcgcc
ttcccgtcgcagatcctcgccgtcacctttaccaacaaggccgcgcgcgagatgaaggag
cgcatcgccctgctcgtcggcggcgccgtcgaaggcatgccctggctcggcaccttccac
tcgatcggcgtcaagctcctgcgccgccatggcgagctcgtcggcctgagctccggtttc
accattctcgacaccgacgacgtcgtgcgcctgatcaagcagctgatccaggccgaaggc
ctcgacgacaagcgctggccggccaagcaattcgccggcatgatcgacacctggaagaac
aagggcctcggccccgccgatatccccgagggtgatgcccgcgcctttgccaatggccgc
ggccgcgaactctatttcgcctatcaggcgcgcctgacgacgctgaacgcctgcgatttc
ggcgacctgctgatgcatccgatcacgatcttccgcaagaacccggatctcctgaaggaa
tatcacggccgcttccgttatatcctcgtcgacgaatatcaggataccaacaccgcccaa
tatatgtggctgaggctgctggcccagcgcgccaagggcgagccgcagaatgtctgctgc
gtcggtgacgacgaccagtcgatctatggctggcgcggcgcggaggtcgacaatatcctg
cgcttcgagaaggatttccccggcgccaaagtcatcaagctggagcgcaactaccgttcg
accgaacatatcctcggcgcggccgcccacctgatcgcccacaatgaaggccgcctgggc
aagacgctattcaccgaccgcgccgatcccgacgacgtcaaggtgcaggttcacgcgtcc
tgggactccgaggaggaagcccgcgccatcggcgaggagatcgagcaactccagcgcagc
aagcatctgctgaacgacatggcgatcctcgtgcgcgcctccttccagatgcgcgaattc
gaagatcgcttcgtcacccttggccttaactaccgcgtcatcggtggcccgcgcttctat
gagcgcctcgaaatccgcgatgccatggcctattttcggctcgtcgcacaaccggccgac
gacctcgccttcgaacgtatcatcaacacgccgaagcgcggcctcggcgatacgacggtg
cgcgcgctacatgattatgcccgcgcccgcgacgtcccgatgctggcggccgccgccgac
atcatcgagacggacgagctgaagccgaaggcgcgcaaagccctcttcgacgtgattcaa
tctttccgccgatggcaggaactgcttgaaaacacaccgcataccgaacttgccgagcag
atcctcgaagagtccggctataccgacatgtggaagaacgacaagagcgcggaagccccg
ggccgtctcgaaaacctcaaggaactgatccgctcgatggaaagcttcgagtcgatgcgc
ggctttctcgaacacgtctcccttgtgatggatgccgagaccaacgagaacctcgacgcc
gtctcgatcatgacgctgcattctgccaagggcctggaattcgacaccgtcttcctcccc
ggctgggaggaaggcctgttcccgcatcagcgctcgctcgatgaaagcggccgcgccggc
ctggaggaggaacgccgcctcgcctatgtcggcatcacccgcgccaaacgccgctgccac
atctggttcgtctccaaccgccgcattcacggtctctggcaatcgaccctgccctcgcga
ttcctggacgaactgccggagagccatgtcgaggtcgccgagatggagcagagctacggc
ggttacggccgcggcggctacggccagtcccgcttcgacaaggccgaacccttcgccaat
tcctattcgacccccggctggaagcgcgcccaggccaacaagaccgatgccacccgcgac
aattggggcacccgctccggccacgccgtcgaacgcatcggttacggcgaaagcggcccg
aaagggcgcatgatcgacggcgaactggtggcgaagtccacgtcctcggagccgtcgcgc
ttcaccctcggcgaccgcgtattccacatgaagttcggcaacggcaacatcaccggcatt
gaaggcaacaagctgacgatcgatttcgatcgcgccggacagaagcgggtgctggacggg
ttcgtcgagcgtgtgtga
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