Rhizobium sp. N1341: AMJ98_CH03115
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Entry
AMJ98_CH03115 CDS
T04420
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rhn
Rhizobium sp. N1341
Pathway
rhn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMJ98_CH03115 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhn03019
]
AMJ98_CH03115 (recQ)
03400 DNA repair and recombination proteins [BR:
rhn03400
]
AMJ98_CH03115 (recQ)
Enzymes [BR:
rhn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMJ98_CH03115 (recQ)
Messenger RNA biogenesis [BR:
rhn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMJ98_CH03115 (recQ)
DNA repair and recombination proteins [BR:
rhn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AMJ98_CH03115 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HHH
GARS_N
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ANL10749
LinkDB
All DBs
Position
complement(3140597..3142465)
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AA seq
622 aa
AA seq
DB search
MPFSGRNEPGFSASDALFSAGRSPLDVLKQVYGYSSFRGKQQKVVEHIVSGGDAVVLFPT
GAGKSLCFQIPALCRDGVGIVVSPLIALMRDQVEAMKQLGIRAAALNSSLSREEFVQVRR
ALSAGKLDLLYVTPERILTDGFRELIASEKIALFAIDEAHCVSQWGHDFRPEYRELGRLG
EQYPGVPRVALTATADPHTRDDIIERLGLGNAEIFTTSFDRPNIAYEIVERDQPRQQLLR
FLSGHKGDSGIVYCLSRAKVEDTADWLNGQGIRALPYHAGMDRALRDSNQDAFLKEENLC
LVATVAFGMGIDKPNVRYVAHLDLPGSVEAYYQETGRAGRDGLPSEVWMAYGMADVIQRR
RMIDEGNAADEIKRVERAKLNALLAICETASCRRQAILAHFGEAHAGQCGNCDTCLKPVE
TWEGTEAAIKALAAVYRTGERFGAGHVIDVLVGNINEKTERFGHVNMPVFGAGKDIPART
WQSVYRQLLAMGLIRIDHEAYGALKLESEARAVFKQERQVFFRKDRPASERRTKKAERSE
RKSGLSGADGTLFEALRAERMSIAKSLGVPPYVVFPDTTLIAFATERPRSRKELLGISGV
GQSKLERYGDAFLEIILSHDKD
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgccgttcagcggacgcaatgaaccaggcttttccgcttccgatgcgctgttttcggcc
ggccgttcgccgctcgacgtcttgaaacaggtctatggttattcctccttccgcggcaaa
cagcagaaggtggtggagcatattgtttccggcggcgatgccgtggtgctttttccgaca
ggcgcgggcaaatcgctgtgcttccagatcccggcactttgccgcgacggcgtcggcatc
gtcgtctcgccgctgattgcgttgatgcgcgatcaggtggaggcgatgaagcagctcggc
atccgcgccgcggcattgaattcgtcgctgtcgcgcgaggagttcgtccaggttcgtcgc
gcgctttcggcgggaaagctcgatcttctctacgtgacgcccgagcgcatcctgacggat
ggtttccgcgagctgatcgccagtgagaagatcgcgctgtttgcgatcgacgaggcccac
tgcgtctcgcaatggggccatgatttccgcccggaatatcgcgagctcggccggctcggc
gaacagtatcccggcgtgccccgcgtggcgctgacggcaacggccgacccgcatacgcgt
gacgatatcatcgagcggctggggctcggcaatgccgaaatcttcaccaccagcttcgac
aggccgaatattgcctatgaaatcgtcgagcgcgaccagccgcgccagcagcttctgcgc
ttcctgtccggccacaagggcgacagcggcatcgtctactgcctgtcgcgcgccaaggtc
gaggacacggccgactggctgaacgggcagggcatccgcgcgctgccctatcacgccggc
atggaccgggcactgcgcgacagcaatcaggatgctttcctgaaagaagagaacctctgc
ctggtcgcgaccgtcgccttcggcatgggcatcgacaagccgaatgtgcgctatgtcgcc
catctcgacctgccgggttcggtggaagcctattaccaggagaccgggcgcgccggccgc
gacggcctgccgtccgaggtctggatggcctatggcatggccgacgtcatccagcgccgc
cgcatgatcgatgagggcaacgctgcagacgaaatcaagcgggtcgagcgcgccaagctc
aacgccttgctggcgatctgcgaaaccgcctcctgccgccggcaggcgatccttgcccat
ttcggcgaggcgcatgccggccaatgcggcaattgcgacacctgcctgaagccggtcgag
acctgggaaggcacggaagccgcgatcaaggcgctcgccgccgtctaccgcaccggcgag
cggttcggcgccggtcatgtcatcgatgtgctggtcggtaacatcaacgaaaagaccgag
cgtttcggccatgtgaatatgccggtcttcggcgccggcaaggacattccggcgcgcaca
tggcaatccgtctaccgccagctgctcgccatgggactgatccgtatcgatcatgaggcc
tatggggcgctgaagctggagtcggaggcgcgcgccgttttcaagcaggaacggcaggtc
ttcttccgcaaggaccggccggcctccgaacggcgtacgaagaaggccgagcgcagcgag
cgcaagtcgggcctgtcgggcgccgacggcacgcttttcgaggcgctgagagccgagcgc
atgtcgatcgccaaatcgctcggcgtaccgccctatgtcgtcttccccgatacgacgctg
atcgcttttgcgacggaacggccgcgcagccgcaaggaattgctcggcatatcgggcgtc
ggacaatcgaagctcgagcgttatggcgacgctttcctggagatcattctctcgcacgat
aaggattga
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