Rhizobium sp. N1341: AMJ98_PC00022
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Entry
AMJ98_PC00022 CDS
T04420
Name
(GenBank) DNA helicase UvrD-like protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhn
Rhizobium sp. N1341
Pathway
rhn03420
Nucleotide excision repair
rhn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AMJ98_PC00022
03430 Mismatch repair
AMJ98_PC00022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhn03400
]
AMJ98_PC00022
Enzymes [BR:
rhn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMJ98_PC00022
DNA repair and recombination proteins [BR:
rhn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AMJ98_PC00022
MMR (mismatch excision repair)
Other MMR factors
AMJ98_PC00022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_11
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ANL12386
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Position
pRspN1341c:complement(27427..29211)
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AA seq
594 aa
AA seq
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MISLTEEQQSAVEVEKHLLLAACPGSGKTRVILAKLLGLADTVEKSPRFIGCITYTNAAV
DEIESRLRVYGTNTSTEKCDVSTIHSFCLQHILRPYSWLVAELPPTFKVLTREIADFEQI
VEAVEDHFGRATMARTFDDYESLRVDVHGEPAGDGFEHGIVTRDSAILYWEFVRARGFLD
FAMILFYSLRILREHPFVARGIAARFEWLLVDEFQDTTDVQLAIFRELHRHLTTKFFMVG
DHNQSIMSFAGARPDLAQEFATEIGAELDYSLTANFRSAPGVVNTAHTLIATNPRMHSEG
KAKDFDAKVTYVHVSQPLNAITEHFLPMLQDEGIELGNAAVLAPWWTHLIPVARALREFD
IPVFGPGARPYRRRRLLAGLAEQLGACAESEHFLGLPGVEKALFRLIGDITGATRFDVFS
YAGRRTALALIYRARACATAHPGGKAWLYQIAAEIAEQLYTDGWVPAPPTALLEASADEM
VRDMRANRVDLENLAISDMGLFANPEKALKLITMHNSKGREFDAVALISMNYGHLPHFSS
TTQEQYDEARRLFYVGITRAKKVLLVASDFSDRRNRPCPFITEAGLMLGGSEDW
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgatctcgctgaccgaggagcagcagtcggccgtcgaggtggaaaaacacctgctgctt
gccgcctgccccggcagcggcaagacccgcgtgatcctcgcaaagcttcttgggcttgcc
gataccgtcgagaaatccccccgatttatcggttgcataacctacacaaatgcggccgtg
gatgagattgaatcgcgcctgcgggtctacggaacgaacacgagcactgaaaagtgcgat
gtttcaacgatccactcgttctgccttcaacacattctgaggccttacagctggctcgtt
gctgagttgccgccaactttcaaggttttgacacgggaaatcgcggatttcgagcaaatc
gtagaggcggtagaggaccacttcggtcgcgccaccatggcaagaaccttcgacgattac
gaatctctgcgagtcgacgtccatggcgagccggcaggtgacggttttgagcatggtatc
gtgacgcgcgattccgccattttgtactgggaattcgtccgcgcgcgcggctttcttgat
ttcgcgatgatccttttttactcgctccgtattctgcgcgaacatccatttgttgccaga
ggaatcgcggcacgctttgaatggctcttggtcgacgagtttcaagacactaccgacgtt
cagctggcgatttttcgcgagctgcaccgccacctgaccacgaaattctttatggtcggc
gaccacaaccagtcaatcatgagctttgccggtgcccgccccgatttggcgcaagaattt
gcgaccgagattggcgccgagctagactattcgctgactgcaaattttcggtccgcgccc
ggcgtcgtcaatacagcgcacaccttgatcgcgaccaatcctcgcatgcattcggaagga
aaagcgaaggattttgatgccaaggttacctacgttcatgtctcccaacccctcaacgca
atcaccgagcattttctgcctatgctgcaggacgaaggtatcgagctcggaaacgcggcc
gttctcgcgccgtggtggacgcacctcatacccgtagcgcgtgcgttaagggagtttgat
atccctgttttcgggccgggtgcgaggccatatagacgacgacgcctgctcgccggcttg
gccgaacaacttggggcctgtgccgagtcggagcattttctcggccttccaggcgttgag
aaagcgctcttcaggcttataggcgacatcacgggcgcgacgcggtttgacgtcttcagc
tatgcgggacgtcggaccgcactggcattgatctatcgcgcacgagcttgcgcgacggct
catcctggtggaaaggcttggctttatcaaatcgcggctgaaatcgcggagcagctgtat
actgacggctgggtcccggccccgccgacagcgctccttgaagcgtcagcggatgagatg
gttcgggacatgcgggcaaatcgcgtggaccttgaaaacctcgctatttctgacatgggg
ctgtttgccaacccggaaaaagctctcaagttgattacgatgcacaactctaagggtcgc
gaattcgatgcggtcgcattgatcagcatgaactacggccaccttcctcatttttcgagc
accacccaagagcagtacgatgaagcgcggcgactgttctatgtgggcatcactcgtgca
aaaaaagttttgcttgtcgcatccgatttctccgacaggcgtaatcggccctgcccgttc
atcaccgaagcagggctgatgttggggggctcggaagattggtaa
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