Rhodococcus sp. NyZ502: ACBG85_04260
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Entry
ACBG85_04260 CDS
T11460
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rhny Rhodococcus sp. NyZ502
Pathway
rhny03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhny00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ACBG85_04260 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhny03400
]
ACBG85_04260 (recD)
Enzymes [BR:
rhny01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ACBG85_04260 (recD)
DNA repair and recombination proteins [BR:
rhny03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ACBG85_04260 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
UvrD-helicase
AAA_11
Viral_helicase1
NAT10_TcmA_helicase
SH3_13
AAA_22
TraI_hel_assoc_N
AAA_24
SLFN-g3_helicase
UvrD_C
AAA_16
AAA_28
Motif
Other DBs
NCBI-ProteinID:
XEU10437
LinkDB
All DBs
Position
905510..907378
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AA seq
622 aa
AA seq
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MTEAQLAQRAKGIVRIFNEAGVLVAADVHVATRVCSLGGETSEEVMLAAALAVRAVRSGS
VCLDLRRMRDVSVDNATEEELTSLPWPEPSEIVAALRLSPLVIGGNAGPLRPLRLVDTDD
GELLYLDRYFLQEQTIRRVLDERASTWPPADLKAVRSRLDSLFVDENGPTIAPDRQRIAA
ALAATQWTTVIAGGPGTGKTHTVARILALLSEELGSNARIGLAAPTGKAAARLQESVREQ
TASLGLPEELAAMTLHRLLGWQRGSSSRFKYNATNRLPYDVVVVDETSMVSLTLMARLLE
AVRPDARLLLVGDPDQLTSVDAGAVLADLVARPVKVSGNPTLTQLVGDDLTATGSEEALS
ADEQDRLRGGIIQLSRGRRFDGTIASLARAVRAGDSAEVLRILRSGDPAVSFHSPEDVDA
LRADIVASSEVVTASAEVGDAIGALKGLESHRLLCAHRDGPYGVGRWAQQAMEWVGTASG
QFLDPTRWYPGQPLLVTANDYEAKIYNGDAGVIVQREDGVPIAAFQRGSDAFLIHPSQLS
SVQTVYAMTIHRSQGSQYDTVSVMLPAEASSLLTRELLYTAITRARNHVRVIGTEDSVRA
GVQRQVLRASGLRREIRPYDGP
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaggcgcaattggcgcagcgcgccaaagggatcgtgcgaatcttcaacgaagcc
ggggttctggttgccgccgatgttcatgtcgcgacgagagtgtgcagcctgggcggtgaa
acttccgaagaagtgatgctggccgcggcgttggcagttcgggccgtgcgatcaggttcg
gtgtgcctcgatctacgacggatgcgtgatgtgagcgtcgacaatgcgacggaggaggaa
cttacgtcgttgccgtggcccgaaccgtcggagatcgttgccgcccttcggctgagccct
ctggtgatcggcggaaacgccggacctctcagaccgctccggttggtcgacacggacgac
ggtgaactcctctacctcgatcgatattttctgcaggagcagacgattcggcgagtgctc
gacgagcgggcgtccacgtggccgcccgccgacctgaaagcggtccgatcgcggctggat
tcgctgttcgtcgacgagaacgggccgaccatcgcgccggatcgtcaacggatagcagct
gctctcgccgcgacacagtggaccaccgtcatcgccggtgggcccggaaccggcaaaacc
catacggtcgcacgtattctcgctctcctgtcggaggaattgggttcgaatgctcgcatc
ggtctggccgcaccgacgggtaaagccgcagcacggctgcaggagtccgtacgtgagcag
accgcgagccttggccttcccgaagaactcgcggccatgaccctgcaccgcctactcggt
tggcagcgggggagttcgagtcgtttcaaatacaatgcgaccaacagacttccctacgat
gtggtcgtcgtcgacgagacgtcgatggtctccctcacgttgatggcgcgcctgctcgaa
gccgttcgccccgatgcccggctactgctcgtcggcgatcccgatcagttgacctcagtc
gacgcgggcgctgttcttgctgatcttgtcgcccgcccggtaaaggtcagtggaaatccg
acgctgacacagttggtgggtgacgatctcacggccactggttccgaagaggcattgagt
gcggatgaacaggatcgtctgcggggcgggatcattcaactctcacgcgggcgccgcttc
gacggaaccatcgcgtcgttggccagggcagttcgagcgggagattccgctgaggttctg
cgtatcctgcgcagcggtgatccagccgtctccttccattcgcccgaggatgttgacgca
ttgcgcgccgacatcgttgcgagttcagaggtggtgacggcgtcggccgaggtgggtgat
gcgatcggcgcgctgaaaggcttggaatcgcaccgccttctgtgcgcccaccgtgacgga
ccgtacggtgtcgggaggtgggcgcagcaggcgatggagtgggtcggcacggcatcaggg
cagtttcttgacccgacgcggtggtatccgggccaacccctgttggtgacggccaacgac
tacgaggcgaagatctacaacggggatgccggggtgatcgtgcagcgtgaggatggcgtg
cctattgccgcattccagcggggcagtgatgcgtttctgattcacccgagccaactctcg
tcggtccagacggtttacgcgatgacgattcaccggagccagggcagccagtacgacacc
gtatcggtgatgttgccggccgaggcgtcgtcactgctgactcgggagttgttgtacacg
gcgatcactcgcgccagaaaccatgtgagagtaatcggcaccgaggattccgtgagggcg
ggagtgcagcgacaggtactcagggcaagtgggctgcgtcgtgagatccgtccgtacgac
gggccgtga
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