Rhodococcus sp. NyZ502: ACBG85_18575
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Entry
ACBG85_18575 CDS
T11460
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rhny Rhodococcus sp. NyZ502
Pathway
rhny03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhny00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACBG85_18575 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhny03021
]
ACBG85_18575 (rho)
03019 Messenger RNA biogenesis [BR:
rhny03019
]
ACBG85_18575 (rho)
Transcription machinery [BR:
rhny03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACBG85_18575 (rho)
Messenger RNA biogenesis [BR:
rhny03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACBG85_18575 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
NACHT
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
XEU07693
LinkDB
All DBs
Position
complement(4038975..4041113)
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AA seq
712 aa
AA seq
DB search
MTDTDLIATSAPAGSESGDNSQASSSASNGAVATSTKRAETRRGAGLSGMVLTELRTLAG
ELGIKGTSGMRKGDLIAAIKERQGGSAKAAPAQSELTLDDAPVARTRAKSTRAARTETPA
AETAPAAESAPAEAAPARTESAEDSDQSAPRRGRQRRGAARRAGSPDQGELSIEQEAPSA
KSDADTAKAADSSKVAETAKAEAPAERPARTEGKSDADQAPAEQGNERPRRERNRDNQGQ
RDNQGQRENQGNRGNQDRQDRQDRQDRGNQNNAGQNNAGPRTDNRNNGPDDDEEGGRGRR
GRRFRERRGRGRDRGEGGAPNDSRETEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPN
DVYVSMNLIRKNGLRRGDAITGAVRVSRDGEQGSQRQKFNPLVRIDTVNGGDVEAAKKRP
EFNKLTPLYPNQRLRLETEQHILTTRVIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANA
VATNNPECYLMVILVDERPEEVTDMQRSVKGEVISSTFDRPPGDHTAVAELAIERAKRLV
EMGKDVVVLLDSITRLGRAYNNSSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLT
IIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSSTRKDELLLSP
DEAAVLHKLRRVLSGLDSHQAIDLLIDRLKKSKNNLEFLMQVSKTAPGAIDD
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatacggacctcatcgccacttctgcacccgccgggtcggaatcaggcgacaat
tctcaggcgtcatcttcagcatcgaacggtgcggtggcgacctccacgaagcgtgccgaa
acgcgccgtggtgccggactctccggcatggtgctcaccgaactccgcactcttgcgggt
gaactgggcatcaaaggcacttccggcatgcgcaagggtgacctgatcgcagccatcaag
gagcgccagggcggcagcgcgaaggctgcacccgcacagagtgaactcactctcgacgac
gcacccgttgcgcgcactcgtgccaagagcactcgcgccgcacgcaccgaaacccccgca
gccgaaacagctccggcagccgagtcggctcctgccgaggccgcgcctgcgcgtaccgaa
tccgccgaggattccgatcagagcgcaccccgtcgcggacgtcagcgtcgtggcgccgct
cgtcgtgcaggttcacccgaccagggcgaactgagcatcgagcaggaagcgccttcggcg
aagtccgacgcggacaccgcgaaggccgccgattcttcgaaggtcgccgagaccgccaag
gccgaggctccggccgagcgtcctgcgcgcaccgagggcaagtccgacgctgatcaggct
cccgccgagcagggcaacgagcgtccccgccgcgagcgcaaccgcgacaaccagggccag
cgcgacaaccagggccagcgcgagaaccagggcaaccggggcaaccaggatcgccaggat
cgccaggaccgccaggaccgcggcaatcagaacaacgccggccagaacaacgccggtcct
cgcacagacaaccgcaacaacgggccggacgacgacgaagagggtggacgcggacgccgc
ggacgccgtttccgcgagcgccgtggccgtggtcgtgaccgcggtgagggtggcgcaccc
aacgattcacgcgagaccgagattcgtgaggacgacgtccttcagccggtcgccggcatc
ctcgacgtcctcgacaattacgccttcgtgcgtacgtccgggtacctcgccggtcccaac
gacgtctacgtctccatgaacctgatccgcaagaacggccttcgccgtggcgacgccatc
accggtgccgtccgcgtctcgcgtgacggtgagcagggcagccagcgccagaagttcaac
ccgctggttcgcatcgacacggtcaacggcggcgacgtcgaggccgcgaagaagcgcccc
gagttcaacaagctcacgccgctgtacccgaaccagcgtctgcgcctcgagaccgagcag
cacattctcaccacgcgtgtcatcgacctggtgatgcccatcggtaagggccagcgcgcc
ctcatcgtgagcccgcccaaggcaggtaagaccagcgtgttgcaggcgatcgcgaatgcc
gtcgccaccaacaatcctgagtgctacctgatggtcatcctcgtggacgagcgtcccgag
gaagtgaccgacatgcagcgcagcgtgaagggtgaggtcatttcctccaccttcgaccgc
ccgccgggagatcacaccgcagttgccgagctggcaatcgagcgtgcgaagcgcctggtc
gagatgggtaaggacgtcgtcgtactgctcgactccatcacgcgtctgggtcgtgcgtac
aacaactcctcgccggcgtcgggacgcatcctctccggtggtgtcgactcgacggcgctc
tacccgccgaagcgtttcctcggtgctgcccgcaacatcgagaacggtggatcgctcacc
atcatcgctaccgcaatggtcgagaccggatccaccggcgacaccgtgatcttcgaagag
ttcaagggcaccggcaacgccgagctcaagctcgatcgcaagatcgccgaacgccgcgtg
ttcccggccgtggacgtcaacccgtccagcacgcgtaaggacgagttgctcctgagcccg
gacgaagctgcggtgctgcacaagctccgccgcgtcctgtccggtctggactcgcatcag
gccatcgatctgctgatcgatcgactgaagaagagcaagaacaacctcgagttcctgatg
caggtctccaagaccgcaccgggtgcgatcgacgactga
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