Roseburia hominis: RHOM_00565
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Entry
RHOM_00565 CDS
T01621
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rho
Roseburia hominis
Pathway
rho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHOM_00565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rho03019
]
RHOM_00565
03009 Ribosome biogenesis [BR:
rho03009
]
RHOM_00565
Enzymes [BR:
rho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RHOM_00565
Messenger RNA biogenesis [BR:
rho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RHOM_00565
Ribosome biogenesis [BR:
rho03009
]
Prokaryotic type
rRNA helicases
RHOM_00565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AEN95240
UniProt:
G2SZI6
LinkDB
All DBs
Position
131724..133424
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AA seq
566 aa
AA seq
DB search
MPCYDSKYCAVGRSGHFLPVLGMRQRIGSGVTERKKMETVRFDELDLYPQVLRAIADMGF
EEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGIPVLHKVDPNSRKTQVIILSPTREL
AIQVADEIRKLAKYMHGVKVLPVYGGQEIGRQIKALKGGAQIIVGTPGRVMDHLRRKTIR
CDAIHTVVLDEADEMLNMGFRDDIETILEYIPAEGRQTILFSATMPKPILDITRKYQHDA
VNIKVVKKELTVPSIEQYYYDVKRSDKVEVLTRLLDYYNPKLSLVFCNTKRMVDELAEEL
KGRGYFAEGLHGDMKQSQRDRVMKGFRSGKTEILIATDVAARGIDVDDVEAVFNYDIPQD
DEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDIMRYCKTKIVAMPIPSTDDVAQIKAE
KVMEEIGRIIDEENLSDMIDMIERQVNASDYTAMDIAAAFLKQALGQVNLDNGSEDDYDF
DNTGAEEGMVRLFINIGKKDRVKPGDILGAIAGESGMPGKLVGAIDMYDKYTFVEVPREY
GREVLEGMKNTKIKGRSVNMEPANQR
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgccgtgctatgattcaaaatactgcgcagtcggcagaagtgggcactttctgccggtg
ctgggcatgcgtcagagaattggctctggcgtgacagaaaggaaaaagatggaaacagtt
agatttgatgagttagatttatatcctcaggtgttaagagcgattgcggatatgggattt
gaggaggcaacgccgattcagagccaggcgattccggttgtgatgtcgggcgtggatgtg
atcggacaggcacagacaggtaccggtaagacggcatcctttggtattccggtgcttcac
aaggtagacccgaacagcagaaagacgcaggtaatcattctctctccgaccagagagctt
gccattcaggtggcggacgagatccgcaaacttgccaagtatatgcacggggtcaaggta
cttccggtgtatggcggacaggagatcggacgccagatcaaggcgttaaagggcggtgcg
cagattatcgtcggaacgccgggacgcgtgatggatcatctgcgccgcaagacgatccgc
tgtgatgcgatccacacggtggtactcgatgaggcggacgagatgctgaacatgggcttc
cgcgatgacatcgagacgattcttgagtatattccggcggagggacgtcagacgatcctt
ttctccgcgacgatgccgaagccgattctcgatattaccaggaaatatcagcacgatgcg
gtcaacatcaaggtggtaaaaaaagagctgacggttccgagcattgagcagtattactac
gatgtcaagcgtagcgacaaggtagaagtcttaacgcggcttctcgattactacaatccg
aagctctcgctggtattctgcaataccaagcggatggtggacgaacttgcggaagaatta
aagggacgcggctattttgcagagggactgcacggagatatgaagcagtcgcagcgtgac
cgcgtgatgaaaggattccgcagcggcaagaccgagatcctcattgcgaccgatgtggcg
gcgcgcggaatcgacgtcgatgatgtggaggccgttttcaactacgacattccgcaggat
gacgaatactatgtgcaccggatcggcagaacgggacgtgcaggtcggaccggacgcgcc
tttaccttcgtgaagggcaaagaagtctacaagctgaaggatatcatgcgctactgcaag
accaagatcgtggcaatgccgattccgtcaacggatgatgtggcacagatcaaggcagag
aaggtcatggaggagatcggcaggatcatcgacgaggagaacctgtcggacatgatcgac
atgatcgagcgccaggtgaatgcttcggattacaccgcaatggatattgcagcggcattt
ttgaagcaggcactcggccaggtcaatctcgacaacggcagcgaggatgactacgacttc
gacaataccggcgcggaggaagggatggtacgtctcttcatcaacatcggtaaaaaagac
cgcgtcaagccgggagacattctcggtgcgatcgccggggagtccggcatgccaggcaag
ctggtcggcgcgatcgacatgtacgacaagtataccttcgtggaggtgccgagagagtac
ggcagagaagtcctcgagggaatgaagaacaccaagatcaaagggcgctctgtcaatatg
gaaccggcaaatcaaaggtag
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