Roseburia hominis: RHOM_00990
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Entry
RHOM_00990 CDS
T01621
Name
(GenBank) type 1 dockerin
Organism
rho
Roseburia hominis
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
GH85_C
Big_2
GAP1-N2
Invasin_D4
Motif
Other DBs
NCBI-ProteinID:
AEN95325
UniProt:
G2SZ86
LinkDB
All DBs
Position
229549..237546
Genome browser
AA seq
2665 aa
AA seq
DB search
MYKDVCKRISAFMLTVCLIVTMVEWPTTVWAGQGTVNTYRNGDGVLAGAPCEAQAVAAVF
TADRNADGAELLDSIDFYAHVDDGSKATATVEYYKDVEGMAPDAGTSIFQKEVSVKEGKN
TYSAGLANQVMENGSRFSVIVRLNGASFYVYGGTAEGESYILGNAGWQDMYTVNGSSAAI
TAYTYDVTATTGRSSSGSDNQTAAQSSNVKKSAAAALNKNSMTIGEGWTDQDLTLQNATG
TVTWVSGNETVAKVSSTGNPATIEGIAVGSTTITATYAGKSYTCNLTVTPNLSEDAVTVS
PENPVYNGGQQIPSVAVQVGDTILKENDQYQLSYAQMVGGAATTFDPATDATVLVNAGTY
YLYITGQNGYSGKIQKEYVIAQKDVSDATVEVTLQDNIDWDKVLADAAADPDNASATLTS
CIQEVKDTARADADAVDGVKNLVEGTDYTISLSKTGRGITLTGTGNYTGERYCGAPRNAA
DANVVFDKTSYVYTGSEWTPAFQLLVDGETISQADYDAVYSDNVNVGQATLTITGKNSLY
GTKTVNFEIKAKDIGNKDQEEVGMAVSVTAAAAGGADKEPVITATYNGMTLEKGTDYTVG
TDIINAGNGTYRRVITGIGNYQGTYTVEYQAAGADLSDLIQKVTAAAVTYNGNAQTPEPD
ITWKSGNNDLGLVEGTDYSVTYASNTNAGTATITLQGMGTYGGAVTGKFTIEQADMSKAV
CYYVDADGSEVSTANYKMEYSPDGADVKPKVVVKFAQGADMVTLPESDYKLTYSADTKIF
AGTASVEIAPSDSNSNFKTGTTKRLTYTIAQCNLTSTKITASIDRELFDYTGAEIALPTE
SVVYHSASKTDHTLKKGTDYTVACSPTTVKDIGTYTMTITGSGNYTGVVTKTFEVTAVDI
QTLINDKNLKVTNSTDRMVTGYDGPYWAMLWYSNNKNDNQLEISLTDNQGNTLVKGTDYE
LKYDGIKDISKEGSTASVTITGKGKFYGKQEIKYLLASKLDEDYDVSVNPAENPVYTGDP
ITLAADEISVSDGGFGLWKSVLEQGTDYTVNYSDGTNADQAINAGEATVTVEQIPLEDQP
TANGCYVYSDGATKLSATFTIRPKDIATGVSYEAIKKAYDGNAVTLTESEIKLTYNKKTL
TAPTDYSIVAGSYANNEKPGPMANVTIQGNGNYTGTKIIVFTISGKSLDEIISWKVDENE
TTYTGERLYPKITELTLSDGTKLTTADEIEKVIAYDESSYADNLNAGEASITVSGKGDYY
GTDDRILTFAILPRSLDNNCTLGGLKSSYTYTSEEITPVPTVQCTDLKKKLGEDDYKISY
ENNVDAGTATMTITGKGNYQGTFTIDYTIAPKNLAEPEVKIAPIDAQEYNGMAVTPAPSV
SYEFGDGTYALSPVNDYTVAYANNKGTGTATVTVTGTGNFTGSKTAEFRIGQLITNESKF
TISCPALTDGTQYVYDGSAFEPEVTVTRIEGNKKLVKDSNYSVTYTDNIHAGTATVSVEG
LGGYVGVWQKTFAIAPRDLTDSSVELSVGGVTDGSYQTQYTGSPVEPEVKLTYDGQKIST
TDYTVSYGADHTSRGTVTLTATAKDGTDFTGSRSTTFTITLASIGNGGYTPANGFKIGAI
EPQPLVDGTATPQPKLYYNGTELVMGTDYICTYEKNDSIGSDAVVILKGIGNYTGSVKKT
FKICANIADAEITVPDELWFKDYVNAGETDIAIGDKNITFDDQISVVLNGTTLQKDTDYT
LVYADNSWVGNAVVTIKGMGGFAGSVEKTVPIKADLSEAGIQVAIGDQQYTGDPVEAIPS
ISYYGTELTSGKHFVIHTYENNVKIGDKTASVTVIGNEKNGFTGTLTENFSIVANAGILE
VSGVESSYLYRGTQIRPQVTVKIGNKTLSTSDYDVTYGENIKAGTDGGSIMVKGKNEYAG
LIKLVTFDINPLQMDDLKVLDGTQNAIGSREYTGKEIVPEFSLKTTIGSTDYILPARSYT
IAKKADADNTNVGTGTVVITGDGSNVIGSREVSFQIVAKSLAKPSSGTDLIAVEVIPDSF
SYDGTEKKPTVLVTYQYGTEVEVRQLTEGSDFTVAYSNNIHAGTATAVISGIGNYTGSRT
VEYTITEKSFDGAIVTFPNGTSYPYMGSDNGVEPEVQVTLDGNVLTAGTDYEVSYQNNKA
CGTATVTVTGKGSYAGSVTAPFTIVSHDIAAADVTVDPIPNQAYTGQPVIPEVKVTCGDY
TLKQGEDYTLSFDTDNTEIGTVLMRINGTGGFTNYRQTTFHIASDISPAEIVGLRDSYPF
TGSVYTPDDLGITEVRIGETVLTTDSYSFAFDNNSDGMSAGTQTLLLIGQGSYGGTKKCT
IEITPKDITDEDVVMSGFEDTVSYSEQITQNVTFQWGEIALVRDTDYTVTCRPAGVAGIY
EMEVAGTGNYTGTVTKQFTVDQTPIDGLEVKGISSTYTYTGKAITPEPEVWADGVQLEKD
KDYTVSYEDNINAGVAKLVITASGTHYAGTKELSFQILRKSIHLCDIGSIQTQVYTGSDI
KPTVTVEDDGKALELLSDYTLMYSNNRKAGTGVAAVAGKGNYTATKNLTFDIRPCDAGAA
VVTGASADSLSISWTGDGAVTGYEVYRAGADGKWQQVTRTRDAFYTDKKLAAETTYSYKV
RSYLVADGETYYGEFTGAVTGTTTK
NT seq
7998 nt
NT seq
+upstream
nt +downstream
nt
atgtacaaggatgtatgcaagagaatttcggcgtttatgctgacagtatgcctgattgtg
acgatggtggaatggccgacgactgtctgggcaggacagggaacggtaaacacctatcgg
aacggagacggggtactggcgggagcgccgtgcgaggcccaggctgtagctgcggtattt
acagcggaccgcaatgcggacggagcagaactgttagacagtattgacttctacgcacat
gtggatgacggcagcaaggcaacggctaccgtggaatattacaaggatgtagaaggcatg
gcgccggatgcgggaacgagcattttccaaaaagaagtcagcgtgaaggaaggaaagaat
acttattccgcagggctggcgaatcaggtaatggagaatggttccaggttttctgtgatc
gtccggttgaacggagcgtccttttatgtatatggcggtacggcagagggagagagctat
attctcggcaatgccggctggcaggatatgtatacagtgaacggaagcagtgcggcgata
actgcatacacctatgatgtaactgctacaaccggaagaagttcttccggttcggataat
cagacggcggcacagagcagcaatgtgaagaagagtgctgccgcagcactgaacaagaac
agcatgaccatcggtgagggatggacggatcaggatcttacactgcagaatgccacggga
acggtaacatgggtttccggcaatgaaacggtggcaaaagtaagcagtacgggcaacccg
gcaaccatcgaaggtattgccgtaggcagcacgacgatcacggcaacctatgcaggaaaa
agctacacctgtaatctgacggtcacaccgaatctttcggaggatgcggtgacagtcagc
ccggagaatccggtatacaacggcggacagcagattccatccgttgcggtacaggtggga
gataccatattaaaagagaacgatcagtaccagctttcctatgcacagatggttggcggt
gcggcgacaacttttgacccggctacggatgcgaccgtgcttgtgaatgcgggaacctat
tacctgtacattaccggacagaacggttacagcggaaagattcagaaggaatacgtgatt
gcacagaaagacgtatcagacgcgacggtggaagtgacactgcaggacaatattgactgg
gataaggtgctggctgatgcggcagcagatccggacaacgcttctgccacacttacctcc
tgtatccaagaggtaaaggatacggcgcgtgcagatgcggatgccgtagacggcgtgaag
aatctggttgaaggaacagattacacgatttccctcagcaagacaggaagaggaattaca
ctgactggtaccggcaactataccggagagagatattgcggtgcaccgcgcaatgcggcg
gacgcgaatgttgtttttgacaagacttcctatgtatataccggaagtgagtggacaccg
gcattccagcttctggtggacggggagaccatttcccaggcggattacgatgcggtatat
tccgacaatgtcaatgtcggacaagccacattgacgattaccggaaaaaattccctttac
ggaacaaagacggtaaattttgagatcaaggcaaaagatattggcaacaaggatcaggaa
gaagttggcatggctgtgtctgtgacggctgctgcggcaggaggagcggacaaggagccg
gtcatcactgcaacctacaacggcatgacgctggagaaggggacggattacaccgtcgga
acagatattatcaatgccggaaacggaacctaccgtcgtgtcatcaccggtatcggaaac
tatcagggaacctacacggtggagtatcaggcggcaggcgctgatctctcagacctgatc
cagaaagtgacggcagcggctgtaacttataacggcaatgcacagacaccggaaccggac
attacctggaagagcggcaacaacgatctgggactggttgagggaacggattactccgtt
acttacgcaagcaacacgaatgcaggaacagcaaccattacgctgcagggtatgggaaca
tacggcggtgcagtgaccggtaaattcacaatcgagcaggcggacatgtcaaaggcggta
tgctactatgtggatgccgatggctccgaggtaagcactgcaaactataagatggaatat
tctccggacggagcagacgtgaagccgaaggtggttgtaaagtttgcgcagggcgcggac
atggtaacacttccggagtcggactacaagctgacctattctgcggataccaagatattt
gcaggtacggcgagcgttgagattgcgccgagcgattccaacagcaattttaagaccggt
acaacgaaacgtctgacgtatacgattgcccagtgcaatcttacaagcacgaagattact
gccagcattgacagagagctgtttgactatacgggagcagagattgcgcttccgacagag
agtgttgtatatcattccgcatcaaagacagatcatacactgaaaaagggaaccgattat
acggtggcatgttcaccgacaacggtaaaagacatcggaacctacacgatgacgattacc
ggaagcggcaactatacaggcgttgttaccaagacgtttgaggttacagcggtagatatc
cagacactgatcaacgacaagaaccttaaggtaaccaacagcacggacaggatggtgaca
ggatatgacggaccatactgggcaatgctgtggtattccaacaataaaaacgataaccag
cttgagatttcactcacggataaccagggcaatacgctggtaaaaggaactgattacgaa
ttaaagtatgacggcatcaaggatatttcaaaagaaggaagcactgcttcggtaacgatt
accggaaagggcaaattctatggcaagcaggagatcaagtatctgctcgcatccaagctt
gatgaggattatgatgtatcggtgaatccggcagaaaacccggtatacacaggagatccg
attacgcttgctgcggatgagatttcggtatcggacggcggattcggactctggaagagc
gtccttgagcagggaacagattatacggtcaactacagtgacggaaccaacgcggatcag
gcgatcaatgccggggaggcgacggttacagtagagcagatcccgctggaggatcagccg
acggcaaacggatgctatgtgtacagcgacggcgccacaaaactgagtgcaacctttacg
attcgtccgaaggacattgcaaccggtgtttcctacgaggcgatcaagaaagcgtacgac
ggaaatgcagtgacccttacagaaagtgagataaagcttacttataataagaagacattg
actgcgccgaccgactattcgatcgtggctggcagctacgcgaacaacgagaaaccggga
ccgatggcaaatgtgaccatacagggtaacggcaactacacaggaacgaagattattgta
ttcaccatcagcggaaaatccctggacgagatcatcagctggaaggtggatgagaacgag
acgacctacaccggcgagcgtctgtatccgaagatcaccgagctgacgctgagcgatgga
acaaagcttacgacagccgatgagatcgagaaagtgatcgcgtatgacgagtcttcctac
gcggacaacctgaatgccggcgaggcatccatcaccgtttccggtaagggagattactac
ggaacagatgacagaatattgacatttgcgattctgccgagaagcctggacaacaactgc
acgcttggcggattaaagtccagctatacatacacttcggaagagattacaccggtacct
acggtacagtgcacagatctgaagaaaaagctcggcgaggatgattacaagatttcctac
gagaataatgtggatgccgggaccgcaacgatgacgattaccggaaaaggaaactatcag
ggaacctttacgatagattatacgattgcgccgaagaatctggcagagccggaggtaaag
atcgcaccgatcgacgcgcaggagtacaacggaatggctgtcacaccggcaccgtcggta
agctatgaatttggagacggaacctatgcgttaagcccggtcaacgattacacggtggct
tacgcgaacaacaaaggaaccggaaccgcaacggtgacagtgaccggaaccggcaacttt
accggaagcaagacggcagaattcagaattggccagctcatcacaaacgagagcaaattt
acgatcagctgcccggcactcaccgacggcacacagtatgtttatgacggaagtgcattt
gagccggaggtgacggtaacacggatcgagggcaacaaaaagctggtaaaagattctaac
tattccgtgacatatacggataatatccacgcgggaaccgcaacggtaagcgtggaaggt
ctgggaggatacgtcggtgtatggcagaagacttttgcgattgcaccgagagatcttacg
gacagcagcgtagagctctctgtcggcggagtgaccgatggaagttatcagacacagtat
accggaagcccggtagagcctgaagtgaagcttacttatgacggacagaagatcagcacg
acggattacacggtatcctacggggcggatcataccagccgcggaaccgtgacgctgacg
gcaacggcaaaggacggtacggactttacaggatcgagaagcacaacctttacgatcaca
cttgcaagtattggcaatggcggatatacaccggcaaacggctttaagatcggagcgatc
gaaccgcagccgctggtggacggaacggcaacaccgcagccgaagctgtactataacgga
acagaacttgtcatgggtacggattatatttgtacttatgagaagaacgacagcattggc
tccgacgcggttgtcattctcaagggaatcggcaattacacaggaagcgtgaagaagacc
tttaagatctgcgcaaacattgcggacgccgagattaccgttccggatgaactgtggttt
aaagattatgtgaatgccggagagacggacattgcaatcggcgataagaacatcacgttt
gacgatcagatcagtgttgtgctgaacggaacaacacttcagaaagataccgactatacg
ctggtctatgcagacaacagctgggtcggcaacgcagtagttaccatcaagggtatggga
ggctttgcgggaagcgtggagaagacggttccgatcaaagcggatctttcggaggcaggc
atccaggtggcaatcggagatcagcagtataccggagatccggtggaggcaatcccgagc
atcagctactacggaacagagctgacatccggaaagcactttgtgattcatacatacgaa
aacaacgtgaagatcggtgataagactgcgagcgtgacggtaatcggaaatgagaaaaac
ggatttaccggaacactcacagagaatttcagcattgttgcaaatgcgggaattctggag
gtaagcggtgtagagagcagctacctgtaccgcggaacacagatccgcccgcaggttacc
gttaagatagggaacaagacactgtccacgtccgattatgatgtgacctatggagagaat
atcaaggcgggaacagacggcggaagcattatggtaaagggtaagaacgagtatgctggt
ctgatcaagctggtaacctttgatattaacccacttcagatggacgacctgaaggtgctt
gacggaacgcagaacgcgatcggaagcagagagtacaccggtaaggagattgtgccggag
ttctcattgaagacaaccatcggatcaacggattacattctgccggcaagaagctatacc
attgcaaagaaggcagacgcggataatacgaatgtaggaaccggtacagtcgtgattacc
ggtgatggaagcaacgtaatcggaagccgtgaagtatccttccagatcgtggcgaaatca
ttggcaaaaccgtcatccggcaccgacctgattgcggtagaagtgattccggacagcttt
tcttatgacggaacggaaaagaagccgactgttcttgtgacatatcagtacggaacagag
gttgaggtacgtcagctgacagagggaagcgattttaccgttgcatacagcaacaatatc
catgcaggaacagcgacagcggtgatttccggtatcggaaattatacgggatcccgcacc
gtggaatacacgattacggagaagagctttgacggagcgattgtcacgttcccgaacgga
acttcctatccgtatatgggaagcgacaacggggtggaaccggaagtgcaggtaacactg
gacggcaatgtactcacagcgggtacggattatgaggtatcttatcagaacaacaaggcg
tgcggtaccgcaactgtgaccgtgacaggaaaaggaagctatgcgggaagcgtaacggca
ccgtttaccatcgtaagccacgatattgcagctgcggatgttacggtggatccgattccg
aatcaggcatacacaggtcagccggtgattccggaagtcaaagtgacctgcggcgattac
accttaaagcagggtgaggactatacactgagctttgacacggacaacacagagatcggc
actgtgctgatgcggatcaacggaaccggcggatttacgaattaccgccagaccacattt
catattgcgagcgacatcagtccggcggagattgtaggactgcgtgacagttacccgttc
acgggaagcgtttatacgccggatgatctgggcattacagaggtacgcatcggcgagacg
gttctgacaacagactcctacagctttgcatttgacaacaacagcgatggcatgagcgcc
ggaacgcagacccttcttctgatcggtcagggaagctatggcggaaccaagaaatgcacc
atcgagattacaccgaaggacatcaccgatgaagatgtggtgatgagcggatttgaggac
acggtatcctactcagagcagattacacagaatgtaacattccagtggggtgagatcgca
ctcgtaagagacaccgattataccgtgacatgcagaccggcaggagtggcaggaatctac
gaaatggaggttgccggaaccggcaactatacaggaaccgttacaaagcagtttactgta
gaccagacgccgatcgacggactggaagtgaagggtatttcttctacttacacatatacc
ggaaaagcaatcacaccggagccggaagtatgggcagacggtgtgcagctggaaaaagat
aaggattacacggtatcctatgaagacaacatcaacgcgggtgtagcgaagctggtaatc
acagcaagcggaacccattatgcaggtactaaggaactgagtttccagattctgcgcaag
agcatacatctgtgcgacattggttcgattcagacacaggtatataccggatctgacatc
aagccgaccgtgacggtggaagatgacggcaaagccctggaacttttaagcgactacaca
ctgatgtattccaacaaccgcaaggcaggtaccggtgtggcggcagttgcaggaaaaggc
aattacaccgcgacaaagaacctgacgtttgacatcagaccgtgcgatgcgggcgcggcg
gttgtgacaggcgcatccgcagacagtctgtccatcagctggacgggcgacggtgccgtg
acgggatacgaagtataccgtgccggcgcagatggaaagtggcagcaggtaacgcgtacc
agagacgctttctataccgataaaaagcttgcggcagagacaacatactcttataaagta
agaagctacctggtggcggacggcgagacttactacggtgagtttaccggagcagttacc
ggaacaaccacaaaataa
DBGET
integrated database retrieval system
