Roseburia hominis: RHOM_03945
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Entry
RHOM_03945 CDS
T01621
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rho
Roseburia hominis
Pathway
rho03410
Base excision repair
rho03430
Mismatch repair
rho03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RHOM_03945
03430 Mismatch repair
RHOM_03945
03440 Homologous recombination
RHOM_03945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rho03400
]
RHOM_03945
DNA repair and recombination proteins [BR:
rho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RHOM_03945
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RHOM_03945
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RHOM_03945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
HTH_10
Ploopntkinase3
DUF34_NIF3
Motif
Other DBs
NCBI-ProteinID:
AEN95911
UniProt:
G2T0B6
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All DBs
Position
853586..855346
Genome browser
AA seq
586 aa
AA seq
DB search
MKMEKWYEIKKGADFQAIAERFGISPVTARLIRNRGVIGDAAIDKYLNGTCRDLYDPHLL
YESEKLVCILSEKIRQGRPIRIIGDYDIDGVMSTYILYQGITRCGGSVSCAIPDRMRDGY
GINEHLIDAAYEEGMDTIITCDNGIAAINEIAHAKELGMTVLVTDHHEIPYVEEQGVRRY
LRSAADAIVNPKQQECSYPYKGLCGATVAWKIIQLLYEKFCIDAEEAFAFLEFVAFATVG
DVMELTDENRILVREGLKRLHRTANLGMRALILQNQLTPEQITSYHIGFVLGPCVNASGR
LETAKIALNLFLQKNEINAGKIAKELVELNAQRKSMTADGVELAKQIVDEGTAGEKVLVI
YLPGVHESLAGIIAGRIRESYHKPVFVLTDGEEGVKGSGRSTEAYSMYDEMCKCRECFSK
FGGHPMAAGLSLREDVAVFRGKINACCELTEEDFIPKIRIDMAMPAAYPTIGLIRELARL
EPFGNGNSKPQFADRELALLRASVVGRNQNVLKLSLMTAAGEHVSAVYFGDVEAWKQYYS
EKYGQTEVDAALRGRANAIRMSVIYYPEINVYQGMESVQLIIRNYK
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
gtgaagatggaaaagtggtatgaaataaaaaaaggcgccgattttcaggcgattgcagaa
cggtttggcatcagtcccgtgacagcgcggctgatccgcaaccgcggggtgatcggtgat
gcggcgattgataaatatctgaacggcacatgcagggatctgtatgatccgcatctgctt
tatgagtcagagaagctggtttgtatcctgtcagaaaagataaggcagggaagaccgatc
cggatcattggagattacgacatcgacggcgtgatgtctacctatattctgtatcagggg
atcacacgatgcggcggcagtgtgtcctgcgcgattcccgaccgcatgcgtgacggctac
ggcatcaacgagcatctgatcgatgcggcgtatgaggaggggatggacacgatcatcacc
tgcgacaacggcattgcagccatcaatgagattgcgcatgcgaaagagctggggatgacg
gttctggtgacggatcaccatgagattccctatgtggaggagcagggagtgcggcggtat
ctgcggagcgcggcggatgccattgtgaatccgaagcagcaggagtgttcctatccgtac
aaagggctctgcggggcgacggtggcgtggaagattatacagctgctttacgagaagttt
tgtattgacgcggaggaggcattcgcgtttctggaatttgtggcgtttgcgacagtgggc
gatgtcatggaactgacggatgagaaccggattctggtgcgggagggattaaagcggctg
caccggacagcgaaccttggcatgcgcgccttgattttacagaatcagctgacgccggag
cagatcacatcgtaccatatcggatttgtgcttggtccctgcgtcaacgccagcggtcgg
ctggagacagccaaaattgcgctgaatcttttcttgcaaaaaaacgagattaatgcaggg
aaaattgcaaaagaacttgtggaactgaacgcacagcgcaaaagcatgacggcagacggc
gtggaactggcaaaacagatcgtcgacgagggaacagcgggcgagaaggtgctggtgatc
tatttgcctggggtgcatgaaagcctggcggggatcattgcggggagaatccgggagtcc
taccacaagccggtatttgttctgacggacggcgaggaaggggtgaaggggtccggcaga
tccacggaagcgtactcgatgtatgacgagatgtgcaagtgccgggaatgtttttcaaaa
ttcggcggacatccgatggcggcagggctgtcgctgcgcgaagatgtggcggtattccgc
ggcaaaataaatgcctgctgtgaattgacagaagaagattttatacctaagataaggata
gatatggcaatgcctgccgcgtatccgacgatcgggctgatccgggagctggcgcgctta
gagccgtttggaaatggcaacagtaagccacagttcgcggacagggagcttgcgcttctg
cgggcgtctgtggtgggcaggaaccagaatgtgttgaagctgtcccttatgacggcggcg
ggagaacatgtctctgcggtctattttggggatgtggaggcatggaagcagtattacagc
gaaaaatacgggcagacggaggtggacgctgcgcttcgcggcagggcgaatgccatccgg
atgtcggtgatttactatccggaaatcaatgtatatcagggaatggagagtgtccagctc
atcattcgcaactataaatag
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