Rhodoferax sp. AJA081-3: HZ993_04345
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Entry
HZ993_04345 CDS
T08330
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rhoa
Rhodoferax sp. AJA081-3
Brite
KEGG Orthology (KO) [BR:
rhoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rhoa03016
]
HZ993_04345
Enzymes [BR:
rhoa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HZ993_04345
Transfer RNA biogenesis [BR:
rhoa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HZ993_04345
Prokaryotic type
tRNA splicing ligases
HZ993_04345
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QTN29082
LinkDB
All DBs
Position
complement(930754..931986)
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AA seq
410 aa
AA seq
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MNYQQLNVPGGVPVKMWTKGVPIEAEAQRQLENAAKLPIVFSHVAVMPDVHYGIGATIGS
VIPTIKAIIPAAVGVDIGCGMIACKTTLVASDLPDNLGRLRSEIEKAVPHGMSPKQYRRE
GSNRDKGSWENTPAAADTAWAQLVTEFDALCVDYPRLKNTNNHRHMGTLGGGNHFVEICL
DEAGSVWIMLHSGSRGVGNAIGTHFIELAKKDAELHQRNLPDQDLAYFEEGAQYFGDYVR
GVGWAQKFARLNREVMMQAVIGALRKSVPKPFETHLEAVNCHHNYVSKETHFGQEVFVTR
KGAVSAKAGELGIIPGSMGAKSFIVRGKGNPDSFNSCSHGAGRTMSRTKAKKLFTVQDQI
DATVGVECRKDADVIDEIPMAYKDIDAVMLAQSDLVEVVYTLKQVVCVKG
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgaactaccaacaactcaacgtacccggcggtgtgccggtgaagatgtggaccaagggc
gtgccgattgaggccgaggcccagcgccagctggaaaacgcggccaagctgccgattgtg
ttcagccacgtggccgtgatgccggatgtgcactacggtatcggcgccactattggtagc
gtgatccccacgatcaaggccatcattcccgctgcggtgggggtggatattggttgcggg
atgattgcctgcaagaccacgttggtggccagcgaccttccggataacctgggtcgcctg
cgtagcgagattgagaaggccgtgccgcacggtatgtcgcccaagcagtaccgccgcgag
gggagcaaccgcgacaaaggttcgtgggaaaacacgcccgctgccgccgacaccgcgtgg
gcacagctggtgaccgagtttgatgcgctgtgcgtggactacccacgcctgaagaacacc
aacaaccaccgccatatgggaacgctgggcgggggtaaccactttgtggagatctgcctg
gacgaagccggtagtgtgtggatcatgttgcatagcgggtcgcgcggcgtgggtaacgcc
attggtacgcactttattgagctggccaagaaggatgccgaactgcaccagcgcaatctg
ccggaccaggacctggcctattttgaagaaggtgcccagtattttggtgactacgtgcgc
ggtgtaggttgggcgcaaaagtttgcgcgtctgaaccgcgaggtgatgatgcaggccgtg
attggcgcgctgcgcaagtctgtgcccaagccgttcgagacgcatctggaggcggtgaat
tgccaccacaactatgtgagcaaggaaacgcactttgggcaagaggtgttcgtgacccgc
aagggcgcggtgagcgccaaggcgggtgagctggggattattcccggcagcatgggcgcc
aagagtttcatcgtgcgcggtaaaggcaacccggatagcttcaacagctgcagccacggt
gcaggccgcaccatgagccgcaccaaggccaaaaagctgttcacggtgcaggatcagatt
gacgccaccgtcggtgtggaatgccgtaaggacgctgatgtgatcgacgagatcccgatg
gcctacaaggacatcgacgccgtgatgctggcccagagcgatctggtggaagtggtgtac
acgctgaagcaggtggtgtgtgtgaagggataa
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