Rhodoferax sp. AJA081-3: HZ993_11320
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Entry
HZ993_11320 CDS
T08330
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rhoa
Rhodoferax sp. AJA081-3
Pathway
rhoa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhoa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HZ993_11320 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhoa03021
]
HZ993_11320 (rpoC)
03400 DNA repair and recombination proteins [BR:
rhoa03400
]
HZ993_11320 (rpoC)
Enzymes [BR:
rhoa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HZ993_11320 (rpoC)
Transcription machinery [BR:
rhoa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HZ993_11320 (rpoC)
DNA repair and recombination proteins [BR:
rhoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HZ993_11320 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QTN30331
UniProt:
A0A975EDU5
LinkDB
All DBs
Position
complement(2428733..2432959)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFGAIKIGMASPEKIRSWSFGEVRKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFSIMSEDDFDAKFKEYGDEFQAKM
GAEGIKDLLQSIDIEGSIEKLRNDLTGSELKIKKNAKRLKVLEAFKKSGIKPEWMVLDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFARLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNVLFPANGEPSIVPSQDVVLGLYYTTRERINGKGEGLIFSDTGEVQRAFDAGEV
ELNAKINVRLTEYTKDKETGEFVPSTKLWETTAGRALLSEILPKGLPFSNINKALKKKEI
SKLINVSFRKCGLKETVVFADKLLQSGFRLATKAGISICIDDMLVPQEKHDIIARAQKEV
KEIEQQYVSGLVTSGERYNKVVDIWGKSGDEVSKVMMAKLSKETVTDRHGKQVQQESFNS
IYMMADSGARGSAAQIRQVAGMRGLMAKPDGSIIETPITANFREGLNVLEYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEQDCGTHGGYLMRAIVEGGEVIESLRDRILG
RTAAEDVLHPENRAVLAEAGAMLDEDLIDELEVAGVDEVKVRTALTCETRFGICAKCYGR
DLGRGGLINGGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGVIGFN
ATMRYVTNSKKELVVIARSGEIIIHDEHGRERERHKVPYGAVLTVKADQTIKAGAILANW
DPLTRPIITEFAGKAHFENVEEGLTVAKQVDEVTGLSTMVVIDPKRRGATKVVRPQVKLI
DATGNEVKIPGTDHSVTIGFQIGSLIQVRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARTPKDKGTLAEITGTVSFGKETKGKIRLQITDPDGKVWEDLVPKEKNMLVHEGQ
VVNKGESVVDGPADPQDILRLLGSEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVENAGDSSYINGEQVERSEMLNTNDALRAEGKIPVTFTNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHEARKVRENMDDAERRA
IAEAEAAELAGDAEAVSEPLGSEGAAGE
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcattactcgacctgttcaagcagttcacgcccgatgagcatttcggtgccatc
aaaatcggcatggcctcgcccgagaagatccgttcgtggtcttttggtgaagtgcgcaag
cctgaaaccatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgccaag
atcttcggacccatcaaggactacgaatgcctgtgcggcaagtacaagcgtctgaaacac
cgcggtgtaatctgcgagaagtgcggcgttgaagtcacgcagaccaaggttcgccgcgaa
cgcatgggtcacatcgacctggctgcgccctgcgcccacatctggttcctgaagtccctg
cccagccgtttgggcctggtgctggacatgacactgcgtgacatcgaacgcgtgttgtac
tttgaagcatacgttgtcaccgaccccggcatgaccccgctgaagaagttcagcatcatg
tccgaagacgacttcgacgccaagttcaaggaatacggcgacgagttccaggccaagatg
ggcgcggaaggtatcaaggacctgctgcaaagcatcgacatcgaaggttcgatcgagaag
ctgcgcaacgacctgaccggctccgaactcaagatcaagaaaaacgccaagcgtttgaag
gttctggaagcgttcaagaaatccggcatcaagcccgagtggatggtgttggacgtgttg
cccgtgttgccaccggacctgcgtccgctggtgccactggacggcggtcgttttgcgacc
tccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacagccgtctgcgccgtttg
ctggaactgaaagcgccggaaatcattgcgcgcaacgagaagcgtatgttgcaggaagcc
gtggacagcttgctggacaacggtcgccgcggcaaggccatgacaggcgccaataagcgc
gccctgaagtctttggccgacatgatcaagggtaaatccggtcgcttccgccagaacttg
ctgggcaagcgcgtcgactactccggtcgttccgtgattaccgtgggcccaacactcaag
ctgcaccagtgcggtctgcccaagctgatggccttggaactcttcaagcccttcatcttc
gcgcgcctggaagccatgggtattgcgaccaccatcaaggcggccaagaaggaagtcgaa
tccggcacgcccgtcgtgtgggatatcttggaagaggtcatcaaagagcaccccgtgatg
ctgaaccgtgcgcctacgctgcaccgtttgggtatccaggcctttgaacccatcctgatc
gaaggcaaggccatccaactgcaccccctcgtttgcgcggccttcaacgccgacttcgac
ggtgaccagatggccgttcacgtgcccctgtcggtggaagcacaaatggaagcccgcacg
ctgatgctggcctccaacaacgtgttgttccccgccaacggcgagccttccattgttccg
tcgcaagacgtggtgctgggtctgtactacacaacccgcgaacgcatcaacggcaagggc
gagggcctgatcttctccgacaccggtgaagtgcagcgcgcctttgacgcgggtgaagtc
gagctgaacgccaagatcaatgtgcgtttgaccgagtacaccaaggacaaggaaaccggc
gagtttgtaccctcgaccaagctgtgggaaaccaccgctggccgtgcactgctgtccgaa
atcttgcccaagggcctgcctttctccaacatcaacaaggcgttgaagaagaaggaaatc
tccaagctgatcaacgtgtcgttccgcaagtgcggattgaaagagaccgtggtgtttgcc
gacaaactgctgcaaagcggcttccgtctggcaaccaaggccggtatctcgatttgtatc
gatgacatgctggtgccgcaagagaagcacgacatcattgcccgtgcgcagaaggaagtc
aaagagatcgaacagcagtatgtgtccggtctggtgacctctggcgagcgttacaacaag
gtggtggatatctggggcaagtcgggtgacgaagtgtccaaggtcatgatggccaagttg
tccaaggaaacggtcaccgaccgccatggcaaacaggtccagcaggaatccttcaactcc
atctacatgatggccgactctggtgcccgcggttccgcagcccagattcgccaggttgct
ggtatgcggggtctgatggctaagcctgacggctccatcatcgagacaccgattaccgcg
aacttccgcgaaggcctgaacgtgttggagtacttcatctccacccacggtgcccgtaag
ggtctggccgatacggcgctgaagacagcgaactccggttacctgacacgccgtctggtc
gacgtgacgcaggatctggtggtgaccgagcaggactgcggtacacacggtggttacctg
atgcgtgccattgtcgaaggcggtgaagtgatcgagtcgctgcgtgaccgtatcttgggc
cgtactgcggctgaagatgtgttgcacccagaaaaccgtgctgtgctggctgaagccggc
gccatgctggacgaagacctgatcgacgagctggaagtggcaggtgtggacgaggtcaag
gtgcgtactgcactgacctgcgaaacccgctttggtatctgcgccaagtgttacggccgc
gatctgggccgtggtggtctgatcaacggcggtgaagcagtcggtgtgatcgctgcgcag
tccatcggtgaacccggtacccagctgaccatgcgtaccttccacatcggtggtgcggcg
tcgcgtgcggccatcgcctccagcgtggaagccaagtccaacggtgtgatcggcttcaac
gccaccatgcgttacgtgaccaatagcaagaaggaattggtggtgattgcccgttctggc
gaaatcatcatccatgacgagcatggccgtgagcgcgagcgccacaaggtgccgtacggc
gcggtgttgaccgtcaaggccgaccagaccatcaaggctggtgccattttggccaactgg
gacccgctgacccgccccatcattaccgaattcgccggcaaggcgcatttcgagaatgtg
gaagaaggtctgaccgttgccaaacaggtcgacgaagtgaccggtttgtccaccatggtg
gttatcgatcccaagcgccgtggcgcaaccaaggtcgtgcgccctcaggtcaagctgatc
gacgcgaccggcaacgaagtgaagattcccggcaccgaccactcggtgaccattggcttc
cagatcggctcgctgatccaggtgcgcgatggccaggacgtgggccccggcgaagtgttg
gcgcgtattccggtcgaaggccagaagacccgcgacattaccggtggtctgccacgggtt
gccgagctgttcgaagcgcgtacacccaaggacaagggtacgttggccgagatcacgggt
accgtgtccttcggtaaggagaccaagggcaagattcgcctgcagattaccgatcctgat
ggcaaggtctgggaagacctggtgcccaaggaaaagaacatgctggtgcacgaaggccag
gtggtcaacaagggcgagtccgtggtggacggcccagccgacccacaggacatcctgcgt
ttgttgggctctgaagagctggcacgttacatcgtcgacgaagtgcaggacgtgtaccgc
ttgcagggcgtgaagatcaacgacaaacacatcgaagtgattgttcgccagatgctgcgc
cgtgtggtggtcgagaacgcgggcgactccagctacatcaacggggaacaggtcgagcgt
tccgagatgctcaacaccaatgatgcactgcgggctgaaggaaagattccggtcaccttc
accaacctgctgctgggtatcaccaaggcgtccttgtccaccgacagcttcatcagcgcg
gcttccttccaggaaaccacccgcgtactgaccgaagccgccatcatgggcaagcgcgac
gagctgcgtggtctgaaggaaaacgtgattgtgggccgtctgattccagccggtaccggc
ttggcgtaccacgaggcacgcaaggtccgcgaaaacatggacgacgccgagcgccgtgcc
attgccgaagccgaagccgctgaactggcgggtgatgctgaagcggtctccgaacccctg
ggcagcgaaggtgctgctggcgagtaa
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integrated database retrieval system
