Rhodoferax sp. AJA081-3: HZ993_16125
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Entry
HZ993_16125 CDS
T08330
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
rhoa
Rhodoferax sp. AJA081-3
Pathway
rhoa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HZ993_16125 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhoa03400
]
HZ993_16125 (uvrA)
DNA repair and recombination proteins [BR:
rhoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HZ993_16125 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HZ993_16125 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
AAA_23
nSTAND1
RsgA_GTPase
AAA_22
DnaJ_CXXCXGXG
nSTAND3
AAA_21
AAA_25
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
QTN26831
UniProt:
A0A975I046
LinkDB
All DBs
Position
complement(3443118..3446237)
Genome browser
AA seq
1039 aa
AA seq
DB search
MVGFPKTPFIPPFSLPRATTLNSPSDGTYLARALQQQTISIRGARTHNLKNIDLDIPRNQ
LVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSTYARQFLQLMDKPDVDVIEGLSPAISI
EQKATSHNPRSTVGTVTEIHDYLRLLFARAGTPYCPDHGLPLQSQTVSQMVDAVLALPVD
TRLMILAPVAREKKGEFLDVFAEMQAQGYVRFRVNGKTYEFDDLPTLKKTEKHDIDVVID
RIKVRPELQQRLAESFEATLRLANGRAIALEMDDPGKAEDIKTDSVTTSNDGGYSPKEHL
FNAKFACPVCSYSISELEPRLFSFNSPVGACPSCDGLGQTDFFDPARVVAFPSLSLASGA
IKGWDRRNGYYFSMLESLAKHYKFDIDAAFESLPEAVQQAILHGSGDEEIKFSYVMDSGA
SQGKKLTKKHPFEGIVPNMARRYRETDSALVREDLSRYRSTQHCPVCEGSRLRREARHVK
IGEGDQARAIFEISRATLRESYAYFQTLTMHGAKGDIAAKVVREIGLRLKFLNDVGLNYL
SLDRSAETLSGGESQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIETLKHLRDIG
NSVLVVEHDEDMMRAADHIIDMGLGAGIHGGRVIAQGNFDAIQSNTESLTGQYLAQTLKI
AVPQRRTPWLPTVAPKPGDEDRFKSRFAPSPAAVRRAEREAHHRATQGDLQALRVVGAKG
HNLKDVTVDFPVGLFTCVTGVSGSGKSTLVNDTLYAAVARTIYRAHDEPAPHTAIEGIEH
FDKVINVDQSPIGRTPRSNPATYTGLFTPIRELMAEVPTARERGYGPGRFSFNVAGGRCE
ACQGDGMVKVEMHFLPDVYVPCDVCAGMRYNRETLEVLYKGKNIAQILELTVEAAYEFLH
AVPTIARKLQTLLDVGLSYIKLGQAATTLSGGEAQRVKLALELSKRDTGRTLYILDEPTT
GLHFADIALLLKVLHQLRDAGNTIVVIEHNLDVIKTADWLIDMGPEGGSGGGTVLGVGTP
EDIAANPASHTGRYLQRLL
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atggtgggtttccccaaaacgccgttcatcccccccttctctcttccacgggccacgacc
ttgaactctccctccgacggcacctaccttgcccgggcattgcagcagcaaaccatcagc
atccggggtgcgcgcacgcacaacctgaaaaacatcgacctggacatcccgcgcaaccag
ctggtggtgatcacaggtttgagcggctccggcaagtccagcctggcctttgacacgctg
tacgccgagggccagcgccggtatgtggaaagcctgtccacctacgcgcgccagtttttg
caactgatggacaaacccgatgtggacgtgattgaaggcctgtcgcccgccatctccatc
gaacaaaaggccaccagccacaacccgcgctccacggtgggcacggtgaccgagatccac
gactacctgcgcctgctgttcgcccgcgccggcacaccctactgccccgaccacggcctg
ccgctgcaaagccagaccgtcagccagatggtggacgccgtgctggccctgccggtggac
acccgcctgatgatcctggcgccggtggcgcgcgaaaaaaagggggagttcctggacgtg
tttgccgagatgcaggcccagggttatgtgcgctttcgggtcaacggcaagacctatgaa
ttcgacgacctgcccacgctgaagaagaccgagaaacacgatatcgatgtggtgatcgac
cgtatcaaggtgcgccccgagttgcagcaacggctggccgagagcttcgaagccacgttg
cgcctggccaacggccgtgccattgcgctggagatggatgatcctggtaaagcagaagac
atcaaaactgatagcgtcaccactagcaacgacgggggctacagccctaaagagcattta
ttcaatgccaagtttgcctgcccggtgtgcagctactccatcagcgagctggagccgcgg
ctgttctccttcaactcccccgtgggtgcctgcccaagctgtgacggcctgggccagacc
gatttttttgaccccgcacgggtggtggcattcccctcactgagcttggccagcggcgcc
atcaaaggatgggaccggcgcaacgggtactacttctccatgctggagagcctggccaaa
cactacaagtttgacatcgatgccgcgtttgaatccctgcccgaagcggtgcagcaggcc
atactgcacggctcgggtgacgaggagatcaagttcagttatgtgatggactccggtgcc
tcgcagggcaagaagctgaccaaaaaacatccgttcgaaggcatcgttcccaatatggcg
cggcgctaccgcgagaccgactcggccctggtgcgtgaggatttatcgcgttaccgcagc
acccagcactgcccggtgtgtgaaggctcacgcctacgccgcgaggcccgccacgtgaag
ataggtgaaggtgaccaggcccgcgccatttttgagatcagccgcgccacgctgcgcgaa
agttatgcctacttccagacgctgaccatgcatggcgccaagggggacatcgcggccaag
gtggtgcgcgagattggtctgcgtctcaagtttctcaacgatgtgggcctgaactatttg
agcctggaccgcagtgctgaaacgctgtccggtggcgagagccaacgcatacgcctggcc
agccagatcggctcgggcctgaccggtgtgatgtatgtgctggacgaacccagcattggc
ctgcaccagcgcgacaacgaccgcctgatcgagacactgaaacacttgcgcgacatcggc
aatagcgtgctggtggtcgaacacgacgaagacatgatgcgtgcggccgaccacatcatc
gatatgggtctgggcgccggcatccacggcgggcgtgtgattgcgcagggcaactttgat
gccatccagtccaacaccgaatcactgaccggtcagtacctggcgcagacgctgaagatt
gccgtgccccagcgccgcacgccctggctgcccaccgtggcgcccaagccgggcgatgaa
gaccgttttaaatcccgctttgcacccagccccgccgccgtgcgccgtgctgagcgcgaa
gcgcaccaccgcgccacccagggcgacctgcaggccctgcgtgtggtgggcgccaagggc
cacaacctgaaagacgtgacggtggacttccctgtcgggcttttcacctgcgtgaccggt
gtgtcgggctccggcaaatccacgctggtcaacgacaccttgtatgccgccgtggcccgc
accatctaccgcgcgcacgacgagccggcgccgcacacggccatcgaaggcatagaacac
ttcgacaaggtcatcaatgtggaccagtctcccatcggccgcacaccgcgctccaacccc
gccacttacaccggcctgttcacacccatccgcgagctgatggccgaggtgcccacggct
cgcgaacgcggttatggccccgggcgcttcagcttcaacgtggccggcggccgctgcgag
gcctgccagggcgacggcatggtcaaggtggagatgcactttttgcccgacgtgtacgtg
ccctgcgatgtgtgcgccggcatgcgttacaaccgcgagacgctggaggtcttgtacaag
ggcaaaaacatcgcgcagatcctggagctgaccgtggaggcggcctacgagtttttgcac
gccgtgccgaccattgcgcgcaaactgcagaccctgctggatgtgggcctgtcctacatc
aagctgggccaggcggccaccacgctgtcgggtggtgaagcacagcgtgtcaagctggcc
ctggagctgtccaaacgcgacacaggccgcacgctgtacatcctggacgaacccaccacc
ggcctgcactttgccgacatcgccctgctgctcaaggtgttgcaccagctgcgggacgcg
ggcaacaccattgtggtcatcgagcacaacctggacgtcatcaagacggcagactggctg
atcgacatgggacccgaaggtggctctggcggcggcaccgtgctgggtgtgggcacgccc
gaagacattgcggcaaacccggccagccataccggacgatatctgcaacgcttgctgtaa
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