Rhodoferax sp. AJA081-3: HZ993_19115
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Entry
HZ993_19115 CDS
T08330
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
rhoa
Rhodoferax sp. AJA081-3
Brite
KEGG Orthology (KO) [BR:
rhoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rhoa03016
]
HZ993_19115
Enzymes [BR:
rhoa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HZ993_19115
Transfer RNA biogenesis [BR:
rhoa03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HZ993_19115
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
WHD_RNase_II
Myosin_N
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QTN27363
LinkDB
All DBs
Position
complement(4069968..4072043)
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AA seq
691 aa
AA seq
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MFLLFEEAGKFMAGRVLSEADASAQVELDSGKRVKVKTANMLLKFEKPSPAEFIAAAQSA
SQGIELEMAWEFAPDEEFGFADLARDYFSPQAPLSEQAAMLFRLFESPHYFRRAGKGRFR
KASADVIAQALAAIEKKKAIALQITAWADELGAGQCPAPIREQLYKILFKPDKNAPEYKA
VVEASRATHTAPLALLQKAGAIASPYQFHWKRFLLENFPKGTGFPAIAAPAVDDKNLPLA
AVQAFSIDDSQTTEIDDALSVQGLGTGTVTLGIHIAAPGLAIQPGDAVDQLGRARLSTVY
MPGYKVTMLPDALVQTYTLQAERDCPALSLYVTLDEATLEIKGHESKIERVPIAHNLRHD
QLDTVVTEPWLLDPAFNHENEPQPLPALREQLSFLYRLAKDLKAKREIVRGKPETFNRPD
YNFRLVGNDGNEPQGDETVQISTRQRGAPLDLIVAEAMILANSTWGSWMAELGVPGIYRS
QASLAPGVKVRMGTKAQPHAGIGVKSYAWSSSPLRRYVDLVNQWQIIACVQHGKTAALAA
PFKPKDASLFSIISSFDEAYSAYNGYQGGMERFWTLRYLQQNGITELEASVFKENMVRAD
TLPLVLPVMGAQNLPRGARVRIKLGEMDLITLDISGTVVERLDTPTATDSSADEAGDDGD
DDEVSGPIAIAVDVSDAPAETADAAVDNPAP
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtttctattgtttgaagaagccggaaaattcatggccggtcgggtgctgtcagaggcg
gatgcttcggcgcaggtggagctggacagcggcaagcgggtcaaggtcaagaccgccaac
atgctgctgaagtttgaaaagccttcgcccgccgagttcatcgccgcagcccaatccgcc
agccagggtatcgagctggaaatggcatgggaattcgcgcctgacgaagagtttggtttt
gccgacctggcgcgcgactatttctcgccccaggcaccgctgtccgagcaggcggccatg
ctgttccggctgtttgaatccccccattacttccgccgcgccggcaaggggcgcttccgc
aaggcatccgccgacgtgatcgcccaggcactggccgccattgagaaaaagaaggccatc
gcgctgcagatcaccgcctgggccgacgagctgggtgcaggccagtgccccgcccccatc
cgcgagcagttgtacaagattctgttcaagcccgacaaaaatgcgcccgagtacaaggcc
gtggtcgaggcatcccgcgctacccataccgcgccgctggccctgctgcaaaaggcgggg
gccatcgcatcgccctaccagttccactggaaacgctttttgctggaaaactttcccaaa
ggcacgggcttcccggccattgccgccccggccgtggacgacaagaatttgccgttggcg
gcggtgcaagccttctccattgacgactcccaaaccaccgagatcgacgatgcgttgtcc
gtccagggcctgggcaccggcacggtcacgctgggcatccacattgcggcgcccggcctg
gccatacagcccggcgacgcggtggaccaactgggccgtgcccgcctgtccaccgtctac
atgcccggctacaaggtcaccatgctgcccgacgccctggtgcaaacctatacgctgcag
gccgagcgcgactgccctgccctctctttgtatgtgacgctggacgaagccacgctggag
atcaagggtcacgagtccaagatcgaacgggtcccgattgcgcacaacctgcgccacgac
cagttggacaccgtcgtaacagagccttggttgctggaccccgccttcaaccacgaaaac
gagccgcagcccctgcccgcattgcgtgagcagctatcatttttataccgactggcaaaa
gacctgaaggccaagcgcgagatcgtgcgcggcaagcccgagaccttcaaccggccggac
tacaacttccgcctggtgggcaacgatggcaatgagccccagggcgacgagaccgtgcag
atcagcacccgccaacgcggtgctccactggacctgatcgtggccgaggccatgatcctg
gccaacagcacctggggcagctggatggccgagctgggcgtgcccgggatctatcgcagc
caggcatcactggcacccggcgtcaaggtgcgcatgggcaccaaggcccagccccatgcc
ggtattggtgtcaagagttatgcctggagcagctcacccctgcgccggtacgtcgatctg
gttaaccagtggcagatcattgcctgtgtgcagcatggcaagacagcagcgctggccgca
cccttcaagcccaaggacgccagcctgttctccatcatctccagctttgacgaggcctac
agcgcctacaacggctaccagggcggcatggagcgcttctggacgctgcgctacctgcaa
caaaatggcatcaccgaactggaggccagcgtgttcaaggagaacatggtgcgggccgac
acgctgcccctggtgttgccggtcatgggtgcacaaaacttgccgcgcggtgcgcgggtg
cgtatcaaactgggcgaaatggacctgatcacgctggacatcagcggcacggtggtggaa
cggctggatacgccaacggccaccgattcctccgccgatgaagcaggcgatgacggtgat
gacgacgaagtcagcggcccgatcgcgattgcggttgacgtcagcgatgcgccggcagaa
acggctgatgccgccgtggataatcctgctccgtga
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