Rhodoferax sp. AJA081-3: HZ993_22925
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Entry
HZ993_22925 CDS
T08330
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rhoa
Rhodoferax sp. AJA081-3
Pathway
rhoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HZ993_22925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhoa03019
]
HZ993_22925
Enzymes [BR:
rhoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HZ993_22925
Messenger RNA biogenesis [BR:
rhoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HZ993_22925
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
CMS1
AAA_22
HI1480
Motif
Other DBs
NCBI-ProteinID:
QTN28061
UniProt:
A0A975I1A7
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All DBs
Position
complement(4897743..4899527)
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AA seq
594 aa
AA seq
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MNFEELNLAAAIVKAVREQGYETPTAIQAQAIPLILEGRDLLGGAQTGTGKTAAFTLPLL
HRLTMSRSAQNKFGGTGIRALVLTPTRELAAQVEESIRTYGKYLQLSSTVIFGGVGMNPQ
ISKLKKGVDILVATPGRLLDLMQQGMLDLGQVQMLVLDEADRMLDMGFIHDVKKVLAAVP
KEKQSLLFSATFSDEIRELAAGLLKDPQSVQVTPRNTTVQRITQVIHPVGRGKKKALLAH
IINEHKWSQVLVFTRTKFGANNVAEFLEKNGITAMALHGNKSQAARTQALAGFKSGDVRA
LVATDIAARGIDIDDLPHVVNYEIPNVSEDYVHRIGRTGRAGNDGAAVNLVCLDEEGFMQ
DIERFTKQTIPVQVIDGFGPEPGEKGEPIAMGRQTIWGGAGKPPSRDVMQAAAKAARTEM
LQRVRESKAGQGDRGGNGGGGRGNGGGGGGGGRAAQGPRGNGGNGGGGGRGGEHAPRPQG
ARGPQGHGGGGGQGRGPRPPMGDAQPRSHEGGFGSGMGERPPRAAPGGQPDPMRTSVDMM
AERGGRRGGGGGYGGNRGGSGNGGGNGGGSRSGGFGGGGNGPRGSGNPRGPFSR
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgaagaattgaacttggctgcggccatcgttaaagccgtgcgcgagcaaggc
tacgaaacgcccaccgccattcaggcccaagccatcccgctgatcctggagggccgcgac
ctgctcggcggcgcccagaccggcaccggcaagaccgctgccttcaccctgcccctgctg
caccgcctcaccatgagccgcagcgcacaaaacaaatttggcggcaccggcatccgcgct
ttggtgctgacccccacccgcgaactggctgcccaggtcgaagagtccatccgcacttac
ggtaaatacctgcaactgagctccaccgtgatttttggcggcgtgggcatgaacccccaa
atctccaagctcaaaaagggcgtcgacatcctggtcgccacgcccggccgtctgctggat
ctgatgcagcaaggcatgctggacctgggccaggtgcagatgctggtgctggacgaagcc
gaccgcatgctggacatgggcttcatccatgacgtcaagaaggttctggccgccgttccc
aaagaaaagcagagcctgctgttctcggccaccttcagcgacgaaatccgcgaactggcc
gctggcctgctcaaagacccgcaaagcgtgcaggtcacaccccgcaacaccaccgtgcag
cgcatcacccaggtgatccacccggtcggtcgcggcaagaagaaggccctgctggcccac
atcatcaacgaacacaagtggagccaggtgctggtgttcacccgcaccaagttcggcgcc
aacaatgtggccgagttcctggagaagaatggcatcaccgccatggcactgcacggcaac
aagagccaggctgcccgtacccaggccctggccggcttcaagagtggtgacgtgcgcgcc
ctggtggccaccgacattgccgcccgcggcattgacatcgacgacctgccacacgtggtg
aactacgagatccccaacgtcagcgaagactatgtgcaccgcatcggccgtaccggccgc
gccggcaacgacggcgctgctgtcaacctggtgtgcctggacgaagaaggcttcatgcag
gacatcgagcgtttcaccaaacaaacgattcccgtgcaggtcatcgacggttttggccca
gagccaggcgaaaagggtgaacccatcgccatgggtcgccagaccatctggggcggcgcg
ggcaaaccacctagccgcgatgtgatgcaggcagccgccaaggccgcccgcaccgaaatg
ctgcaacgtgtgcgcgaaagcaaggctggccagggtgaccgtggcggcaatggtggcggc
ggacgtggcaacggtggcggtggcggtggcggtggacgcgcggcacaaggcccccgtggt
aatggcggaaatggtggcggcggtggacgcggtggcgaacacgcccctcgcccacaaggc
gcacgtggtccccaaggccacggcggcggtggcggtcaaggccgtggtccacgtcctccc
atgggtgacgcacaaccgcgcagccacgaaggcggatttggcagcggcatgggcgagcgc
cctccccgcgctgcaccaggtggtcaacccgaccccatgcgcaccagtgtcgatatgatg
gctgaacgcggcggacgccgtggcggcggcggtggttatggtggcaaccgcggcggttca
ggcaacggaggcggcaatggcggcggatcacggtcgggtggttttggtggcgggggcaac
gggcctcgtgggtcgggaaatcctcgcggaccttttagccgataa
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